Applicative toolboxes¶
“Builtin” toolboxes, shipped with the main BrainVISA distribution¶
Name and URL | Author or Lab | BV versions | Systems | Short desription | |
---|---|---|---|---|---|
|
Morphologist toolbox | UNATI, CEA | all | all | T1 MRI segmentation, cortical sulci recognition and morphometry toolbox |
|
Cortical surface toolbox | LSIS, CNRS | 3.1 or > | all | Cortical surface parameterization and analysis |
|
BrainRAT toolbox | BioPICSEL, MIRCEN, CEA | 3.1 or > | all | Ex vivo 3D reconstruction and analysis |
|
Freesurfer toolbox | LNAO, CEA | 4.2 or > | all | Link between Morphologist toolbox and FreeSurfer software. |
|
Anatomist | UNATI, CEA | all | all | Interactive 3D visualization |
SnapBase | UNATI / CATI | all | All | Snapshots and posters renderings for large databases, based on Anatomist, designed to ease quality check. | |
DataMind | Neurospin | all | All | Statistical analysis and data mining toolbox | |
HighRes Cortex | NeuroSpin | all | All | Analysis of the laminar structure of the cortex in high resolution MRI | |
Primatologist | BioPICSEL, MIRCEN, CEA | all | All | Segmentation toolbox dedicated to primate brain images |
External toolboxes, distributed by other labs¶
Name and URL | Author or Lab | BV versions | Systems | Short desription | |
---|---|---|---|---|---|
IntrAnat | Grenoble Institute of Neuroscience | 4.3-5.0 | Linux | IntrAnat is a collection of software to manage, analyse and anatomical (MRI, CT) and functional SEEG data (Intracranial electrodes) of epileptic patients. |
Former toolboxes for which maintainance has stopped¶
Name and URL | Author or Lab | BV versions | Systems | Short desription | |
---|---|---|---|---|---|
|
RIC | Peter Kochunov | all | Linux | Cortical thickness maps, gyrification index, sulcal length and depth, NIFTI and NEMA formats converters... |
|
Vobi One | INT, CNRS | currently tested only with 4.3 | Linux | Data processing for functional optical imaging |