Applicative toolboxes

“Builtin” toolboxes, shipped with the main BrainVISA distribution

	Name and URL	Author or Lab	BV versions	Systems	Short desription
‹ ›	Morphologist toolbox	UNATI, CEA	all	all	T1 MRI segmentation, cortical sulci recognition and morphometry toolbox
‹ ›	Cortical surface toolbox	LSIS, CNRS	3.1 or >	all	Cortical surface parameterization and analysis
‹ ›	BrainRAT toolbox	BioPICSEL, MIRCEN, CEA	3.1 or >	all	Ex vivo 3D reconstruction and analysis
	Freesurfer toolbox	LNAO, CEA	4.2 or >	all	Link between Morphologist toolbox and FreeSurfer software.
‹ ›	Anatomist	UNATI, CEA	all	all	Interactive 3D visualization
	HighRes Cortex	NeuroSpin	5.x-	All	Analysis of the laminar structure of the cortex in high resolution MRI
‹ ›	Primatologist	BioPICSEL, MIRCEN, CEA	5.x-	All	Segmentation toolbox dedicated to primate brain images
	DISCO	MeCA research group in Marseille, Ebrains, CATI	6.0-	All	Diffeomorphic structural-based cortical registration: 3D registration using sulcal constraints

External toolboxes, distributed by other labs

	Name and URL	Author or Lab	BV versions	Systems	Short desription
	IntrAnat	Grenoble Institute of Neuroscience	4.3-5.0	Linux	IntrAnat is a collection of software to manage, analyse and anatomical (MRI, CT) and functional SEEG data (Intracranial electrodes) of epileptic patients.

Former toolboxes for which maintainance has stopped

	Name and URL	Author or Lab	BV versions	Systems	Short desription
	RIC	Peter Kochunov	all	Linux	Cortical thickness maps, gyrification index, sulcal length and depth, NIFTI and NEMA formats converters...
	Vobi One	INT, CNRS	currently tested only with 4.3	Linux	Data processing for functional optical imaging
	SnapBase	UNATI / CATI	-5.0	All	Snapshots and posters renderings for large databases, based on Anatomist, designed to ease quality check.
	DataMind	Neurospin	-5.0	All	Statistical analysis and data mining toolbox