#include <aims/mesh/mesher.h>

Public Types
enum	SmoothingType { LAPLACIAN, SIMPLESPRING, POLYGONSPRING, LOWPASS }

Public Member Functions
	Mesher ()

virtual	~Mesher ()

void	getInterface (std::map< size_t, std::list< MapOfFacet > > &interface, const AimsData< short > &thing)

void	doit (const AimsData< short > &thing, const std::string &name, const std::string &mode="binar")

void	doit (const AimsData< short > &thing, std::map< size_t, std::list< AimsSurfaceTriangle > > &surface)

void	getBrain (const AimsData< short > &thing, AimsSurfaceTriangle &surface, bool insideinterface=false)

void	getWhite (const AimsData< short > &thing, AimsSurfaceTriangle &surface)

void	getSingleLabel (const AimsData< short > &thing, AimsSurfaceTriangle &surface)

void	getMeshFromMapOfFacet (const AimsData< short > &thing, AimsSurfaceTriangle &surface, MapOfFacet &mof)

void	setSmoothing (SmoothingType smoothType, int smoothIt, float smoothRate)

void	setSmoothingLaplacian (float smoothFeatureAngle)

void	setSmoothingSpring (float smoothForce)

void	unsetSmoothing ()

void	smooth (AimsSurfaceTriangle &surface)

void	setDecimation (float deciReductionRate, float deciMaxClearance, float deciMaxError, float deciFeatureAngle)

void	unsetDecimation ()

float	decimate (AimsSurfaceTriangle &surface)

float	decimate (AimsSurfaceTriangle &surface, const std::vector< float > &precthresholds, const TimeTexture< float > &precisionmap)
	Decimation using a precision texture map. More...

void	doit (const AimsData< short > &thing, std::map< size_t, std::list< std::map< short, std::list< AimsSurfaceTriangle > > > > &surface)

void	setSplitting ()

void	unsetSplitting ()

void	setLabelInf (int labelInf)

void	setLabelSup (int labelSup)

void	setMinSurface (float minSurface)

float	surfaceOfInterface (const AimsSurfaceTriangle &surface)

void	setTriOutputFile () __attribute__((__deprecated__("specify extension in the output filename " "of setMeshOutputFile() or doit()")))
	OBSOLETE - specify extension in the output filename of setMeshOutputFile() or doit() More...

void	setMeshOutputFile ()

void	setMinFacetNumber (uint m)

bool	verbose () const

void	setVerbose (bool x)

Protected Member Functions
void	getReducedNeighOutwardCycles (MapOfFacet &thing)

void	getExtendedNeighOfFacet (MapOfFacet &thing)

void	getVertices (const std::vector< Facet * > &vfac, std::vector< Point3df > &vertex, float sizeX, float sizeY, float sizeZ)

void	getSmoothedVertices (const std::vector< Facet * > &vfac, AimsSurfaceTriangle &surface, float rate)

void	getSmoothedLaplacian (const std::vector< Facet * > &vfac, AimsSurfaceTriangle &surface, float featureAngle, int nIteration, float rate)

void	getSmoothedSimpleSpring (const std::vector< Facet * > &vfac, AimsSurfaceTriangle &surface, float force, int nIteration, float rate)

void	getSmoothedPolygonSpring (const std::vector< Facet * > &vfac, AimsSurfaceTriangle &surface, float force, int nIteration, float rate)

void	getSmoothedLowPassFilter (const std::vector< Facet * > &vfac, AimsSurfaceTriangle &surface, int nIteration, float rate)

void	getDecimatedVertices (std::vector< Facet * > &vfac, std::vector< Point3df > &vertex, float reductionRatePercent, float maxClearanceMm, float maxErrorMm, float minFeatureEdgeAngleDegree)

void	getDecimatedVertices (std::vector< Facet * > &vfac, std::vector< Point3df > &vertex, float reductionRatePercent, float maxClearanceMm, float maxErrorMm, float minFeatureEdgeAngleDegree, const std::vector< float > &thresholds, const TimeTexture< float > *precisionmap=0)

float	decimate (AimsSurfaceTriangle &surface, const std::vector< float > &thresholds, const TimeTexture< float > *precisionmap)

void	getNormals (const std::vector< Facet * > &vfac, const std::vector< Point3df > &vertex, std::vector< Point3df > &normal)

void	getTriangles (const std::vector< Facet * > &vfac, std::vector< AimsVector< uint, 3 > > &triangle)

void	splitting (const AimsData< short > &thing, const std::vector< Facet * > &vfac, const AimsSurfaceTriangle &surface, std::map< short, std::list< AimsSurfaceTriangle > > &splitted)

void	getFacet (const AimsSurfaceTriangle &surface, std::vector< Facet * > &vfac)

void	clear (std::map< size_t, std::list< MapOfFacet > > &interface)

Protected Attributes
bool	_smoothFlag

int	_smoothIt

float	_smoothRate

float	_smoothFeatureAngle

float	_smoothForce

SmoothingType	_smoothType

bool	_deciFlag

float	_deciReductionRate

float	_deciMaxClearance

float	_deciMaxError

float	_deciFeatureAngle

bool	_splittingFlag

int	_labelInf

int	_labelSup

float	_minSurface

bool	_triOutputFlag

uint	_minFacetNumber

bool	_verbose

Detailed Description

Definition at line 51 of file mesher.h.

Member Enumeration Documentation

◆ SmoothingType

enum Mesher::SmoothingType

Enumerator
LAPLACIAN
SIMPLESPRING
POLYGONSPRING
LOWPASS

Definition at line 54 of file mesher.h.

Constructor & Destructor Documentation

◆ Mesher()

Mesher::Mesher ( )

inline

Definition at line 62 of file mesher.h.

◆ ~Mesher()

virtual Mesher::~Mesher ( )

inlinevirtual

Definition at line 76 of file mesher.h.

Member Function Documentation

◆ clear()

void Mesher::clear ( std::map< size_t, std::list< MapOfFacet > > & interface )

protected

◆ decimate() [1/3]

float Mesher::decimate ( AimsSurfaceTriangle & surface )

◆ decimate() [2/3]

float Mesher::decimate	(	AimsSurfaceTriangle &	surface,
		const std::vector< float > &	precthresholds,
		const TimeTexture< float > &	precisionmap
	)

Decimation using a precision texture map.

In this mode, the texture values are checked according to the precision thresholds, and vertices above the threshold are not removed. A time texture may be provided if a step-by-step evolution is needed. Similarly, the thresholds may evolve with decimation timesteps. precisionmap and thresholds may have differing sizes (they are clamped if overrun).

◆ decimate() [3/3]

float Mesher::decimate	(	AimsSurfaceTriangle &	surface,
		const std::vector< float > &	thresholds,
		const TimeTexture< float > *	precisionmap
	)

protected

◆ doit() [1/3]

void Mesher::doit	(	const AimsData< short > &	thing,
		const std::string &	name,
		const std::string &	mode = `"binar"`
	)

Referenced by aims::ClusterArgMaker::make().

◆ doit() [2/3]

void Mesher::doit	(	const AimsData< short > &	thing,
		std::map< size_t, std::list< AimsSurfaceTriangle > > &	surface
	)

◆ doit() [3/3]

void Mesher::doit	(	const AimsData< short > &	thing,
		std::map< size_t, std::list< std::map< short, std::list< AimsSurfaceTriangle > > > > &	surface
	)

◆ getBrain()

void Mesher::getBrain	(	const AimsData< short > &	thing,
		AimsSurfaceTriangle &	surface,
		bool	insideinterface = `false`
	)

◆ getDecimatedVertices() [1/2]

void Mesher::getDecimatedVertices	(	std::vector< Facet * > &	vfac,
		std::vector< Point3df > &	vertex,
		float	reductionRatePercent,
		float	maxClearanceMm,
		float	maxErrorMm,
		float	minFeatureEdgeAngleDegree
	)

protected

◆ getDecimatedVertices() [2/2]

void Mesher::getDecimatedVertices	(	std::vector< Facet * > &	vfac,
		std::vector< Point3df > &	vertex,
		float	reductionRatePercent,
		float	maxClearanceMm,
		float	maxErrorMm,
		float	minFeatureEdgeAngleDegree,
		const std::vector< float > &	thresholds,
		const TimeTexture< float > *	precisionmap = `0`
	)

protected

◆ getExtendedNeighOfFacet()

void Mesher::getExtendedNeighOfFacet ( MapOfFacet & thing )

protected

◆ getFacet()

void Mesher::getFacet	(	const AimsSurfaceTriangle &	surface,
		std::vector< Facet * > &	vfac
	)

protected

◆ getInterface()

void Mesher::getInterface	(	std::map< size_t, std::list< MapOfFacet > > &	interface,
		const AimsData< short > &	thing
	)

◆ getMeshFromMapOfFacet()

void Mesher::getMeshFromMapOfFacet	(	const AimsData< short > &	thing,
		AimsSurfaceTriangle &	surface,
		MapOfFacet &	mof
	)

◆ getNormals()

void Mesher::getNormals	(	const std::vector< Facet * > &	vfac,
		const std::vector< Point3df > &	vertex,
		std::vector< Point3df > &	normal
	)

protected

◆ getReducedNeighOutwardCycles()

void Mesher::getReducedNeighOutwardCycles ( MapOfFacet & thing )

protected

◆ getSingleLabel()

void Mesher::getSingleLabel	(	const AimsData< short > &	thing,
		AimsSurfaceTriangle &	surface
	)

◆ getSmoothedLaplacian()

void Mesher::getSmoothedLaplacian	(	const std::vector< Facet * > &	vfac,
		AimsSurfaceTriangle &	surface,
		float	featureAngle,
		int	nIteration,
		float	rate
	)

protected

◆ getSmoothedLowPassFilter()

void Mesher::getSmoothedLowPassFilter	(	const std::vector< Facet * > &	vfac,
		AimsSurfaceTriangle &	surface,
		int	nIteration,
		float	rate
	)

protected

◆ getSmoothedPolygonSpring()

void Mesher::getSmoothedPolygonSpring	(	const std::vector< Facet * > &	vfac,
		AimsSurfaceTriangle &	surface,
		float	force,
		int	nIteration,
		float	rate
	)

protected

◆ getSmoothedSimpleSpring()

void Mesher::getSmoothedSimpleSpring	(	const std::vector< Facet * > &	vfac,
		AimsSurfaceTriangle &	surface,
		float	force,
		int	nIteration,
		float	rate
	)

protected

◆ getSmoothedVertices()

void Mesher::getSmoothedVertices	(	const std::vector< Facet * > &	vfac,
		AimsSurfaceTriangle &	surface,
		float	rate
	)

protected

◆ getTriangles()

void Mesher::getTriangles	(	const std::vector< Facet * > &	vfac,
		std::vector< AimsVector< uint, 3 > > &	triangle
	)

protected

◆ getVertices()

void Mesher::getVertices	(	const std::vector< Facet * > &	vfac,
		std::vector< Point3df > &	vertex,
		float	sizeX,
		float	sizeY,
		float	sizeZ
	)

protected

◆ getWhite()

void Mesher::getWhite	(	const AimsData< short > &	thing,
		AimsSurfaceTriangle &	surface
	)

◆ setDecimation()

void Mesher::setDecimation	(	float	deciReductionRate,
		float	deciMaxClearance,
		float	deciMaxError,
		float	deciFeatureAngle
	)

Referenced by aims::ClusterArgMaker::make().

◆ setLabelInf()

void Mesher::setLabelInf ( int labelInf )

inline

Definition at line 149 of file mesher.h.

◆ setLabelSup()

void Mesher::setLabelSup ( int labelSup )

inline

Definition at line 150 of file mesher.h.

◆ setMeshOutputFile()

void Mesher::setMeshOutputFile ( )

inline

Definition at line 165 of file mesher.h.

◆ setMinFacetNumber()

void Mesher::setMinFacetNumber ( uint m )

inline

Definition at line 169 of file mesher.h.

Referenced by aims::ClusterArgMaker::make().

◆ setMinSurface()

void Mesher::setMinSurface ( float minSurface )

inline

Definition at line 154 of file mesher.h.

◆ setSmoothing()

void Mesher::setSmoothing	(	SmoothingType	smoothType,
		int	smoothIt,
		float	smoothRate
	)

Referenced by aims::ClusterArgMaker::make().

◆ setSmoothingLaplacian()

void Mesher::setSmoothingLaplacian ( float smoothFeatureAngle )

Referenced by aims::ClusterArgMaker::make().

◆ setSmoothingSpring()

void Mesher::setSmoothingSpring ( float smoothForce )

◆ setSplitting()

void Mesher::setSplitting ( )

◆ setTriOutputFile()

void Mesher::setTriOutputFile ( )

inline

OBSOLETE - specify extension in the output filename of setMeshOutputFile() or doit()

Definition at line 161 of file mesher.h.

◆ setVerbose()

void Mesher::setVerbose ( bool x )

inline

Definition at line 172 of file mesher.h.

◆ smooth()

void Mesher::smooth ( AimsSurfaceTriangle & surface )

◆ splitting()

void Mesher::splitting	(	const AimsData< short > &	thing,
		const std::vector< Facet * > &	vfac,
		const AimsSurfaceTriangle &	surface,
		std::map< short, std::list< AimsSurfaceTriangle > > &	splitted
	)

protected

◆ surfaceOfInterface()

float Mesher::surfaceOfInterface ( const AimsSurfaceTriangle & surface )

◆ unsetDecimation()

void Mesher::unsetDecimation ( )

◆ unsetSmoothing()

void Mesher::unsetSmoothing ( )

◆ unsetSplitting()

void Mesher::unsetSplitting ( )

◆ verbose()

bool Mesher::verbose ( ) const

inline

Definition at line 171 of file mesher.h.

Member Data Documentation

◆ _deciFeatureAngle

float Mesher::_deciFeatureAngle

protected

Definition at line 187 of file mesher.h.

◆ _deciFlag

bool Mesher::_deciFlag

protected

Definition at line 183 of file mesher.h.

◆ _deciMaxClearance

float Mesher::_deciMaxClearance

protected

Definition at line 185 of file mesher.h.

◆ _deciMaxError

float Mesher::_deciMaxError

protected

Definition at line 186 of file mesher.h.

◆ _deciReductionRate

float Mesher::_deciReductionRate

protected

Definition at line 184 of file mesher.h.

◆ _labelInf

int Mesher::_labelInf

protected

Definition at line 191 of file mesher.h.

◆ _labelSup

int Mesher::_labelSup

protected

Definition at line 192 of file mesher.h.

◆ _minFacetNumber

uint Mesher::_minFacetNumber

protected

Definition at line 198 of file mesher.h.

◆ _minSurface

float Mesher::_minSurface

protected

Definition at line 194 of file mesher.h.

◆ _smoothFeatureAngle

float Mesher::_smoothFeatureAngle

protected

Definition at line 179 of file mesher.h.

◆ _smoothFlag

bool Mesher::_smoothFlag

protected

Definition at line 176 of file mesher.h.

◆ _smoothForce

float Mesher::_smoothForce

protected

Definition at line 180 of file mesher.h.

◆ _smoothIt

int Mesher::_smoothIt

protected

Definition at line 177 of file mesher.h.

◆ _smoothRate

float Mesher::_smoothRate

protected

Definition at line 178 of file mesher.h.

◆ _smoothType

SmoothingType Mesher::_smoothType

protected

Definition at line 181 of file mesher.h.

◆ _splittingFlag

bool Mesher::_splittingFlag

protected

Definition at line 189 of file mesher.h.

◆ _triOutputFlag

bool Mesher::_triOutputFlag

protected

Definition at line 196 of file mesher.h.

◆ _verbose

bool Mesher::_verbose

protected

Definition at line 200 of file mesher.h.

The documentation for this class was generated from the following file:

aims/mesh/mesher.h

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Member Enumeration Documentation

◆ SmoothingType

Constructor & Destructor Documentation

◆ Mesher()

◆ ~Mesher()

Member Function Documentation

◆ clear()

◆ decimate() [1/3]

◆ decimate() [2/3]

◆ decimate() [3/3]

◆ doit() [1/3]

◆ doit() [2/3]

◆ doit() [3/3]

◆ getBrain()

◆ getDecimatedVertices() [1/2]

◆ getDecimatedVertices() [2/2]

◆ getExtendedNeighOfFacet()

◆ getFacet()

◆ getInterface()

◆ getMeshFromMapOfFacet()

◆ getNormals()

◆ getReducedNeighOutwardCycles()

◆ getSingleLabel()

◆ getSmoothedLaplacian()

◆ getSmoothedLowPassFilter()

◆ getSmoothedPolygonSpring()

◆ getSmoothedSimpleSpring()

◆ getSmoothedVertices()

◆ getTriangles()

◆ getVertices()

◆ getWhite()

◆ setDecimation()

◆ setLabelInf()

◆ setLabelSup()

◆ setMeshOutputFile()

◆ setMinFacetNumber()

◆ setMinSurface()

◆ setSmoothing()

◆ setSmoothingLaplacian()

◆ setSmoothingSpring()

◆ setSplitting()

◆ setTriOutputFile()

◆ setVerbose()

◆ smooth()

◆ splitting()

◆ surfaceOfInterface()

◆ unsetDecimation()

◆ unsetSmoothing()

◆ unsetSplitting()

◆ verbose()

Member Data Documentation

◆ _deciFeatureAngle

◆ _deciFlag

◆ _deciMaxClearance

◆ _deciMaxError

◆ _deciReductionRate

◆ _labelInf

◆ _labelSup

◆ _minFacetNumber

◆ _minSurface

◆ _smoothFeatureAngle

◆ _smoothFlag

◆ _smoothForce

◆ _smoothIt

◆ _smoothRate

◆ _smoothType

◆ _splittingFlag

◆ _triOutputFlag

◆ _verbose