aims::FoldGraphAttributes Class Reference

Creation of cortical folds graph attributes. More...

#include <aims/foldgraph/foldgraphattributes.h>

Public Member Functions
	FoldGraphAttributes (const AimsData< int16_t > &skel, Graph &graph, const AffineTransformation3d *talairachAffineTransformation3d=0, int16_t inside=0, int16_t outside=11, bool withmeshes=true, const std::vector< int > &graphversion=std::vector< int >())
	skel is the skeleton image of the hemisphere, It must be allocated with a border of at least 1 voxel width. More...
void	cleanup ()
	frees the depth map More...
void	doAll ()
	creates all attributes (global + all nodes/relations types) More...
void	makeMeshes ()
void	makeGlobalAttributes ()
void	makeSimpleSurfaceAttributes ()
void	makeJunctionAttributes ()
void	makePliDePassageAttributes ()
void	makeCorticalRelationAttributes ()
void	makeSummaryGlobalAttributes ()
AimsData< int16_t > &	getDepth ()
const AimsData< int16_t > &	getDepth () const
AimsData< int16_t > &	getNDepth ()
const AimsData< int16_t > &	getNDepth () const
AimsData< float > &	getBrainDepth ()
AimsData< float > &	getBrainDepthGradX ()
AimsData< float > &	getBrainDepthGradY ()
AimsData< float > &	getBrainDepthGradZ ()
const AimsData< float > &	getBrainDepth () const
const AimsData< float > &	getBrainDepthGradX () const
const AimsData< float > &	getBrainDepthGradY () const
const AimsData< float > &	getBrainDepthGradZ () const
AimsData< float > &	getDilatedDepth ()
AimsData< float > &	getDilatedDepthGradX ()
AimsData< float > &	getDilatedDepthGradY ()
AimsData< float > &	getDilatedDepthGradZ ()
const AimsData< float > &	getDilatedDepth () const
const AimsData< float > &	getDilatedDepthGradX () const
const AimsData< float > &	getDilatedDepthGradY () const
const AimsData< float > &	getDilatedDepthGradZ () const
float	getDepthfactor () const
void	prepareDepthMap ()
void	prepareBrainDepthMap ()
AimsData< int16_t >	rebuildCorticalRelations ()
	outputs the voronoi in brain hull from hull junctions More...
std::vector< int >	graphVersion () const
	returns a vector value of 2 or more numbers from the target graph version, or the current cartograph library version More...
void	thickness (const BucketMap< float > &midinterfaceDistances, const carto::VolumeRef< int16_t > voronoi)
void	greyAndCSFVolumes (const carto::VolumeRef< int16_t > gw, const carto::VolumeRef< int16_t > voronoi)
void	setMaxThreads (int mt)
	Sets the maxumum number of threads used in multithreaded-enabled parts. More...
int	maxThreads () const
Mesher &	mesher ()

Friends
class	DistanceMapThreadContext

Detailed Description

Creation of cortical folds graph attributes.

Definition at line 49 of file foldgraphattributes.h.

Constructor & Destructor Documentation

FoldGraphAttributes()

aims::FoldGraphAttributes::FoldGraphAttributes	(	const AimsData< int16_t > &	skel,
		Graph &	graph,
		const AffineTransformation3d *	talairachAffineTransformation3d = 0,
		int16_t	inside = 0,
		int16_t	outside = 11,
		bool	withmeshes = true,
		const std::vector< int > &	graphversion = std::vector< int >()
	)

skel is the skeleton image of the hemisphere, It must be allocated with a border of at least 1 voxel width.

Member Function Documentation

cleanup()

void aims::FoldGraphAttributes::cleanup

(

)

frees the depth map

doAll()

void aims::FoldGraphAttributes::doAll

(

)

creates all attributes (global + all nodes/relations types)

getBrainDepth() [1/2]

AimsData<float>& aims::FoldGraphAttributes::getBrainDepth

(

)

getBrainDepth() [2/2]

const AimsData<float>& aims::FoldGraphAttributes::getBrainDepth

(

)

const

getBrainDepthGradX() [1/2]

AimsData<float>& aims::FoldGraphAttributes::getBrainDepthGradX

(

)

getBrainDepthGradX() [2/2]

const AimsData<float>& aims::FoldGraphAttributes::getBrainDepthGradX

(

)

const

getBrainDepthGradY() [1/2]

AimsData<float>& aims::FoldGraphAttributes::getBrainDepthGradY

(

)

getBrainDepthGradY() [2/2]

const AimsData<float>& aims::FoldGraphAttributes::getBrainDepthGradY

(

)

const

getBrainDepthGradZ() [1/2]

AimsData<float>& aims::FoldGraphAttributes::getBrainDepthGradZ

(

)

getBrainDepthGradZ() [2/2]

const AimsData<float>& aims::FoldGraphAttributes::getBrainDepthGradZ

(

)

const

getDepth() [1/2]

AimsData<int16_t>& aims::FoldGraphAttributes::getDepth

(

)

getDepth() [2/2]

const AimsData<int16_t>& aims::FoldGraphAttributes::getDepth

(

)

const

getDepthfactor()

float aims::FoldGraphAttributes::getDepthfactor

(

)

const

getDilatedDepth() [1/2]

AimsData<float>& aims::FoldGraphAttributes::getDilatedDepth

(

)

getDilatedDepth() [2/2]

const AimsData<float>& aims::FoldGraphAttributes::getDilatedDepth

(

)

const

getDilatedDepthGradX() [1/2]

AimsData<float>& aims::FoldGraphAttributes::getDilatedDepthGradX

(

)

getDilatedDepthGradX() [2/2]

const AimsData<float>& aims::FoldGraphAttributes::getDilatedDepthGradX

(

)

const

getDilatedDepthGradY() [1/2]

AimsData<float>& aims::FoldGraphAttributes::getDilatedDepthGradY

(

)

getDilatedDepthGradY() [2/2]

const AimsData<float>& aims::FoldGraphAttributes::getDilatedDepthGradY

(

)

const

getDilatedDepthGradZ() [1/2]

AimsData<float>& aims::FoldGraphAttributes::getDilatedDepthGradZ

(

)

getDilatedDepthGradZ() [2/2]

const AimsData<float>& aims::FoldGraphAttributes::getDilatedDepthGradZ

(

)

const

getNDepth() [1/2]

AimsData<int16_t>& aims::FoldGraphAttributes::getNDepth

(

)

getNDepth() [2/2]

const AimsData<int16_t>& aims::FoldGraphAttributes::getNDepth

(

)

const

graphVersion()

std::vector<int> aims::FoldGraphAttributes::graphVersion

(

)

const

returns a vector value of 2 or more numbers from the target graph version, or the current cartograph library version

greyAndCSFVolumes()

void aims::FoldGraphAttributes::greyAndCSFVolumes	(	const carto::VolumeRef< int16_t >	gw,
		const carto::VolumeRef< int16_t >	voronoi
	)

makeCorticalRelationAttributes()

void aims::FoldGraphAttributes::makeCorticalRelationAttributes

(

)

makeGlobalAttributes()

void aims::FoldGraphAttributes::makeGlobalAttributes

(

)

makeJunctionAttributes()

void aims::FoldGraphAttributes::makeJunctionAttributes

(

)

makeMeshes()

void aims::FoldGraphAttributes::makeMeshes

(

)

makePliDePassageAttributes()

void aims::FoldGraphAttributes::makePliDePassageAttributes

(

)

makeSimpleSurfaceAttributes()

void aims::FoldGraphAttributes::makeSimpleSurfaceAttributes

(

)

makeSummaryGlobalAttributes()

void aims::FoldGraphAttributes::makeSummaryGlobalAttributes

(

)

maxThreads()

int aims::FoldGraphAttributes::maxThreads ( ) const

inline

Definition at line 112 of file foldgraphattributes.h.

mesher()

Mesher& aims::FoldGraphAttributes::mesher ( )

inline

Definition at line 113 of file foldgraphattributes.h.

prepareBrainDepthMap()

void aims::FoldGraphAttributes::prepareBrainDepthMap

(

)

prepareDepthMap()

void aims::FoldGraphAttributes::prepareDepthMap

(

)

rebuildCorticalRelations()

AimsData<int16_t> aims::FoldGraphAttributes::rebuildCorticalRelations

(

)

outputs the voronoi in brain hull from hull junctions

setMaxThreads()

void aims::FoldGraphAttributes::setMaxThreads

(

int

mt

)

Sets the maxumum number of threads used in multithreaded-enabled parts.

1 means mono-threaded, 0 means une thread per CPU. A negative value means one thread per CPU, but never use more CPUs than the absolute value of the given number.

thickness()

void aims::FoldGraphAttributes::thickness	(	const BucketMap< float > &	midinterfaceDistances,
		const carto::VolumeRef< int16_t >	voronoi
	)

Friends And Related Function Documentation

DistanceMapThreadContext

friend class DistanceMapThreadContext

friend

Definition at line 116 of file foldgraphattributes.h.

---

The documentation for this class was generated from the following file:

• aims/foldgraph/foldgraphattributes.h