FFD vector field deformation transform. More...

#include <aims/registration/ffd.h>

Inheritance diagram for aims::TrilinearFfd:

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Collaboration diagram for aims::TrilinearFfd:

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Public Member Functions
	TrilinearFfd (int dimX=0, int dimY=1, int dimZ=1, float sizeX=1., float sizeY=1., float sizeZ=1.)

template<typename T>
	TrilinearFfd (int dimX, int dimY, int dimZ, const carto::rc_ptr< carto::Volume< T > > &test_volume)

	TrilinearFfd (const TrilinearFfd &other)

	TrilinearFfd (const carto::rc_ptr< carto::Volume< Point3df > > &other)

TrilinearFfd &	operator= (const TrilinearFfd &other)

Point3dd	deformation (const Point3dd &p_mm) const

virtual carto::rc_ptr< soma::Transformation3d >	composed (const carto::rc_ptr< soma::Transformation3d > &other) const

virtual carto::rc_ptr< soma::Transformation3d >	leftComposed (const carto::rc_ptr< soma::Transformation3d > &other) const

Public Member Functions inherited from aims::FfdTransformation
	FfdTransformation (int dimX=0, int dimY=1, int dimZ=1, float sizeX=1., float sizeY=1., float sizeZ=1.)

template<typename T>
	FfdTransformation (int dimX, int dimY, int dimZ, const carto::rc_ptr< carto::Volume< T > > &test_volume)

template<typename T>
	FfdTransformation (int dimX, int dimY, int dimZ, const carto::Volume< T > &test_volume)

	FfdTransformation (const FfdTransformation &other)

	FfdTransformation (const carto::rc_ptr< carto::Volume< Point3df > > &other)

FfdTransformation &	operator= (const FfdTransformation &other)

	operator const carto::VolumeRef< Point3df > & () const

	operator carto::VolumeRef< Point3df > & ()

	operator const carto::rc_ptr< carto::Volume< Point3df > > & () const

	operator carto::rc_ptr< carto::Volume< Point3df > > & ()

carto::rc_ptr< carto::Volume< Point3df > > &	ctrlDeformations ()

bool	isIdentity () const CARTO_OVERRIDE
	Always false, because testing for identity is expensive.

bool	isDirect () const override

Point3df	getCtrlKnot (int nx, int ny, int nz) const

void	updateCtrlKnot (int nx, int ny, int nz, const Point3df &newCtrlKnot)

void	updateAllCtrlKnot (const carto::rc_ptr< carto::Volume< Point3df > > &newCtrlKnotGrid)

void	updateAllCtrlKnotFromDeformation (const carto::rc_ptr< carto::Volume< Point3df > > &newDeformationGrid)

void	increaseResolution (const Point3d &addKnots)

Point3dd	deformation (const Point3dd &p_mm) const

Point3dd	ffdCoord (const Point3dd &p_mm) const

int	dimX () const

int	dimY () const

int	dimZ () const

int	getSizeX () const

int	getSizeY () const

int	getSizeZ () const

std::vector< int >	getSize () const

float	sizeX () const

float	sizeY () const

float	sizeZ () const

std::vector< float >	getVoxelSize () const

bool	isFlat (int i) const

bool	isXFlat () const

bool	isYFlat () const

bool	isZFlat () const

virtual void	updateDimensions ()

void	printControlPointsGrid () const

void	writeDebugCtrlKnots (const std::string &filename) const

void	writeDebugDeformations (const std::string &filename, int dimX, int dimY, int dimZ, float sizeX, float sizeY, float sizeZ) const

void	write (const std::string &filename) const

carto::rc_ptr< soma::Transformation3d >	operator* (const soma::Transformation3d &other) const

virtual carto::rc_ptr< soma::Transformation3d >	operator* (const carto::rc_ptr< soma::Transformation3d > &other) const

void	buildFromOther (const soma::Transformation3d &other)

Public Member Functions inherited from soma::Transformation3d
virtual	~Transformation3d ()

Point3dd	transform (double x, double y, double z) const

Point3dd	transform (const Point3dd &pos) const

Point3df	transform (const Point3df &dir) const

Point3df	transform (float x, float y, float z) const

Point3d	transform (const Point3d &p) const

Point3di	transform (const Point3di &p) const

Point3di	transform (int x, int y, int z) const

virtual std::vector< double >	transform (const std::vector< double > &pos) const

virtual std::vector< float >	transform (const std::vector< float > &pos) const

virtual std::vector< int >	transform (const std::vector< int > &pos) const

virtual std::vector< double >	transformVector (const std::vector< double > &pos) const

virtual std::vector< float >	transformVector (const std::vector< float > &pos) const

virtual std::vector< int >	transformVector (const std::vector< int > &pos) const

Public Member Functions inherited from soma::Transformation
virtual	~Transformation ()

virtual Transformation &	operator= (const Transformation &other)

carto::Object	header ()

const carto::Object	header () const

void	setHeader (carto::Object ph)

virtual bool	invertible () const

virtual std::unique_ptr< Transformation >	getInverse () const

Public Member Functions inherited from carto::RCObject
	RCObject ()

	RCObject (const RCObject &)

RCObject &	operator= (const RCObject &)

virtual	~RCObject ()

Additional Inherited Members
Public Types inherited from carto::RCObject
typedef int	RefCounterType

Static Public Member Functions inherited from soma::Transformation
static std::vector< T >	vadd (const std::vector< T > &v1, const std::vector< T > &v2)

static std::vector< T >	vsub (const std::vector< T > &v1, const std::vector< T > &v2)

static std::vector< T >	vadd (const std::vector< T > &v1, const T &v2)

static std::vector< T >	vsub (const std::vector< T > &v1, const T &v2)

static std::vector< T >	vadd (const T &v1, const std::vector< T > &v2)

static std::vector< T >	vsub (const T &v1, const std::vector< T > &v2)

Protected Member Functions inherited from aims::FfdTransformation
Point3dd	splineVoxToMm (const Point3dd &p) const

Point3dd	mmToSplineVox (const Point3dd &p) const

void	updateGridResolution (const carto::rc_ptr< carto::Volume< Point3df > > &newGrid)

Protected Member Functions inherited from soma::Transformation3d
	Transformation3d ()

virtual Point3dd	transformPoint3dd (const Point3dd &pos) const

virtual Point3df	transformPoint3df (const Point3df &dir) const

virtual Point3d	transformPoint3d (const Point3d &p) const

virtual Point3di	transformPoint3di (const Point3di &p) const

virtual Point3df	transformFloat (float x, float y, float z) const

virtual Point3di	transformInt (int x, int y, int z) const

Protected Member Functions inherited from soma::Transformation
	Transformation ()

Protected Attributes inherited from aims::FfdTransformation
carto::VolumeRef< Point3df >	_ctrlPointDelta

int	_dimx

int	_dimy

int	_dimz

float	_vsx

float	_vsy

float	_vsz

bool	_flatx

bool	_flaty

bool	_flatz

Protected Attributes inherited from soma::Transformation
carto::Object	_header

Detailed Description

FFD vector field deformation transform.

Free Form Deformation is the registration technique used to build the vector fields. This class is dedicated to the application of the vector field deformation to transform coordinates.

This is a variant of SplineFfd which is performing trilinear interpolation between displacement vectors. See SplineFfd for details.

Definition at line 312 of file ffd.h.

Constructor & Destructor Documentation

◆ TrilinearFfd() [1/4]

aims::TrilinearFfd::TrilinearFfd	(	int	dimX = 0,
		int	dimY = 1,
		int	dimZ = 1,
		float	sizeX = 1.,
		float	sizeY = 1.,
		float	sizeZ = 1. )

References aims::FfdTransformation::dimX(), aims::FfdTransformation::dimY(), aims::FfdTransformation::dimZ(), aims::FfdTransformation::sizeX(), aims::FfdTransformation::sizeY(), and aims::FfdTransformation::sizeZ().

Referenced by operator=(), and TrilinearFfd().

◆ TrilinearFfd() [2/4]

template<typename T>

aims::TrilinearFfd::TrilinearFfd	(	int	dimX,
		int	dimY,
		int	dimZ,
		const carto::rc_ptr< carto::Volume< T > > &	test_volume )

inline

Definition at line 344 of file ffd.h.

References aims::FfdTransformation::dimX(), aims::FfdTransformation::dimY(), aims::FfdTransformation::dimZ(), and aims::FfdTransformation::FfdTransformation().

◆ TrilinearFfd() [3/4]

aims::TrilinearFfd::TrilinearFfd ( const TrilinearFfd & other )

References TrilinearFfd().

◆ TrilinearFfd() [4/4]

aims::TrilinearFfd::TrilinearFfd ( const carto::rc_ptr< carto::Volume< Point3df > > & other )

Member Function Documentation

◆ composed()

virtual carto::rc_ptr< soma::Transformation3d > aims::TrilinearFfd::composed ( const carto::rc_ptr< soma::Transformation3d > & other ) const

virtual

Implements aims::FfdTransformation.

◆ deformation()

Point3dd aims::TrilinearFfd::deformation ( const Point3dd & p_mm ) const

◆ leftComposed()

virtual carto::rc_ptr< soma::Transformation3d > aims::TrilinearFfd::leftComposed ( const carto::rc_ptr< soma::Transformation3d > & other ) const