roi.h

Go to the documentation of this file.

/* This software and supporting documentation are distributed by
 *     Institut Federatif de Recherche 49
 *     CEA/NeuroSpin, Batiment 145,
 *     91191 Gif-sur-Yvette cedex
 *     France
 *
 * This software is governed by the CeCILL-B license under
 * French law and abiding by the rules of distribution of free software.
 * You can  use, modify and/or redistribute the software under the
 * terms of the CeCILL-B license as circulated by CEA, CNRS
 * and INRIA at the following URL "http://www.cecill.info".
 *
 * As a counterpart to the access to the source code and  rights to copy,
 * modify and redistribute granted by the license, users are provided only
 * with a limited warranty  and the software's author,  the holder of the
 * economic rights,  and the successive licensors  have only  limited
 * liability.
 *
 * In this respect, the user's attention is drawn to the risks associated
 * with loading,  using,  modifying and/or developing or reproducing the
 * software by the user in light of its specific status of free software,
 * that may mean  that it is complicated to manipulate,  and  that  also
 * therefore means  that it is reserved for developers  and  experienced
 * professionals having in-depth computer knowledge. Users are therefore
 * encouraged to load and test the software's suitability as regards their
 * requirements in conditions enabling the security of their systems and/or
 * data to be ensured and,  more generally, to use and operate it in the
 * same conditions as regards security.
 *
 * The fact that you are presently reading this means that you have had
 * knowledge of the CeCILL-B license and that you accept its terms.
 */

/*
 *  Region Of Interest
 */
#ifndef AIMS_ROI_ROI_H
#define AIMS_ROI_ROI_H

#include <aims/config/aimsdata_config.h>
#include <map>

#include <aims/data/data_g.h>
#include <aims/bucket/bucket_g.h>
#include <graph/graph/graph.h>
#include <aims/roi/hie.h>


namespace aims {


class AIMSDATA_API AimsRoi : public Graph
{
public:

  AimsRoi( Hierarchy *hierarchy=NULL );
  virtual ~AimsRoi() { }

  void setLabel( AimsData< short> &label);

  void setHierarchy( Hierarchy *hie ) { hRoi = hie; }
  Hierarchy* getHierarchy() { return hRoi;};

  std::set<Vertex*> VertByNameAndDescendantName(std::string& name);

  void setBucketFilename( const std::string& );

  void data2bucket();
  void data2bucket( const std::map <int,std::string> &nameList );
  void bucket2data( int borderWidth=0 );
  AimsRoi* clipBucket( int x, int y, int z, int lx, int ly, int lz);



private:

  Hierarchy     *hRoi;
  Hierarchy      hDefault;
};

}

#endif