aims::StandardReferentials Class Reference

#include <aims/resampling/standardreferentials.h>

Static Public Member Functions
static std::string	mniTemplateReferential ()
static std::string	acPcReferential ()
static std::string	talairachReferential ()
static std::string	commonScannerBasedReferential ()
static std::string	mniTemplateReferentialID ()
static std::string	acPcReferentialID ()
static std::string	commonScannerBasedReferentialID ()
static std::string	icbm2009cTemplateReferentialID ()
static const AffineTransformation3d &	talairachToICBM ()
static const AffineTransformation3d &	talairachToICBM2009cTemplate ()
	Transformation between the ICBM152 standard space and the ICBM152 template space.
static const carto::Object	icbm2009cTemplateHeader ()
	Return a header with size and characteristics of the ICBM2009c MNI template volume.
static std::string	referentialID (const std::string &refName, bool commonScannerBased=false, bool genNewIds=true, const std::string &commonSuffix="")
	try to identify referential ID from its string name or description.
static bool	isUUID (const std::string &refName)

Detailed Description

Definition at line 42 of file standardreferentials.h.

Member Function Documentation

acPcReferential()

static std::string aims::StandardReferentials::acPcReferential ( )

static

acPcReferentialID()

static std::string aims::StandardReferentials::acPcReferentialID ( )

static

commonScannerBasedReferential()

static std::string aims::StandardReferentials::commonScannerBasedReferential ( )

static

Referenced by soma::FsSurfFormatReader< D >::readAdditions().

commonScannerBasedReferentialID()

static std::string aims::StandardReferentials::commonScannerBasedReferentialID ( )

static

icbm2009cTemplateHeader()

static const carto::Object aims::StandardReferentials::icbm2009cTemplateHeader ( )

static

Return a header with size and characteristics of the ICBM2009c MNI template volume.

icbm2009cTemplateReferentialID()

static std::string aims::StandardReferentials::icbm2009cTemplateReferentialID ( )

static

isUUID()

static bool aims::StandardReferentials::isUUID ( const std::string & refName )

static

mniTemplateReferential()

static std::string aims::StandardReferentials::mniTemplateReferential ( )

static

mniTemplateReferentialID()

static std::string aims::StandardReferentials::mniTemplateReferentialID ( )

static

referentialID()

static std::string aims::StandardReferentials::referentialID ( const std::string & refName, bool commonScannerBased = false, bool genNewIds = true, const std::string & commonSuffix = "" )

static

try to identify referential ID from its string name or description.

for instance "Talairach-MNI template-SPM" will be translated to its AIMS uuid, "803552a6-ac4d-491d-99f5-b938392b674b"

If commonScannerBased is true, then "Scanner-based anatomical coordinates" will be translated to the value of commonScannerBasedReferentialID(), so that other ref names of the same kind will match. If commonScannerBased is false, then a scanner-based ref name will be either translated to a new UUID, or returned unchanged or with a suffix, depending on the values of genNewIds (see below) and commonSuffix. If commonSuffix has a value, it will be appended after the name "Scanner-based anatomical coordinates".

if genNewIds is true, then: if the refName is an unkwnown referential name (and not an UUID), then a new UUID will be generated for it, each time this function is called: so calling it twice with the same name will result in two distinct IDs. if genNewIds is false, and the refName is not recognized, then it will be returned unchanged.

talairachReferential()

static std::string aims::StandardReferentials::talairachReferential ( )

static

talairachToICBM()

static const AffineTransformation3d & aims::StandardReferentials::talairachToICBM ( )

static

talairachToICBM2009cTemplate()

static const AffineTransformation3d & aims::StandardReferentials::talairachToICBM2009cTemplate ( )

static

Transformation between the ICBM152 standard space and the ICBM152 template space.

includes shifts and axes inversions.

This is the "most standard" field of view of the template image, the one from the ICBM2009c_nlin_asym template from the MNI. Actually we find various fields of view for the templates. The one we use here is (193, 229, 193). The transform to the "real" ICBM space (0 roughly at AC) is provided in the output transformation header. This space has a fixed transformation with our Aims Talairach, along with the template volume size and voxel size. This space has a fixed transformation with our Aims Talairach.

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The documentation for this class was generated from the following file:

• aims/resampling/standardreferentials.h