|  | aimsdata
    5.1.2
    Neuroimaging data handling | 
#include <aims/data/cartodatavolume.h>


| Classes | |
| struct | Private | 
| Public Types | |
| typedef T | value_type | 
| typedef T * | pointer | 
| basic pointer  More... | |
| typedef T **** | pointer4d | 
| 4D-pointer  More... | |
| typedef T * | iterator | 
| basic iterator  More... | |
| typedef const T * | const_iterator | 
| basic constant iterator  More... | |
| typedef T & | reference | 
| basic reference  More... | |
| typedef const T & | const_reference | 
| basic constant reference  More... | |
| typedef size_t | size_type | 
| size of the basic type  More... | |
| typedef ptrdiff_t | difference_type | 
| difference type  More... | |
|  Public Types inherited from carto::RCObject | |
| typedef int | RefCounterType | 
| Public Member Functions | |
| iterator | begin () | 
| const_iterator | begin () const | 
| iterator | end () | 
| const_iterator | end () const | 
| bool | empty () const | 
| AimsData (int dimx=1, int dimy=1, int dimz=1, int dimt=1, int borderw=0) | |
| AimsData (int dimx, int dimy, int dimz, int dimt, int borderw, const carto::AllocatorContext &al) | |
| AimsData (const AimsData< T > &other) | |
| AimsData (const AimsData< T > &other, int borderw) | |
| virtual | ~AimsData () | 
| AimsData (const carto::rc_ptr< carto::Volume< T > > &vol) | |
| AimsData (const carto::VolumeRef< T > &vol) | |
| AimsData< T > & | operator= (const carto::rc_ptr< carto::Volume< T > > &vol) | 
| AimsData< T > & | operator= (const AimsData< T > &) | 
| AimsData< T > & | operator= (const T &) | 
| carto::VolumeRef< T > & | volume () | 
| const carto::VolumeRef< T > & | volume () const | 
| operator carto::rc_ptr< carto::Volume< T > > & () | |
| cast to Volume  More... | |
| operator const carto::rc_ptr< carto::Volume< T > > & () const | |
| operator carto::VolumeRef< T > & () | |
| operator const carto::VolumeRef< T > & () const | |
| const carto::AllocatorContext & | allocator () const | 
| int | dimX () const | 
| int | dimY () const | 
| int | dimZ () const | 
| int | dimT () const | 
| float | sizeX () const | 
| float | sizeY () const | 
| float | sizeZ () const | 
| float | sizeT () const | 
| void | setSizeX (float sizex) | 
| void | setSizeY (float sizey) | 
| void | setSizeZ (float sizez) | 
| void | setSizeT (float sizet) | 
| void | setSizeXYZT (float sizex=1.0f, float sizey=1.0f, float sizez=1.0f, float sizet=1.0f) | 
| void | setSizeXYZT (const AimsData< T > &other) | 
| const aims::Header * | header () const | 
| aims::Header * | header () | 
| void | setHeader (aims::Header *hdr) | 
| reference | operator[] (size_type n) | 
| const_reference | operator[] (size_type n) const | 
| reference | operator() (size_type x=0, size_type y=0, size_type z=0, size_type t=0) | 
| const_reference | operator() (size_type x=0, size_type y=0, size_type z=0, size_type t=0) const | 
| reference | operator() (const Point4d &pt) | 
| const_reference | operator() (const Point4d &pt) const | 
| reference | operator() (const Point4dl &pt) | 
| const_reference | operator() (const Point4dl &pt) const | 
| reference | operator() (const Point3d &pt) | 
| const_reference | operator() (const Point3d &pt) const | 
| reference | operator() (const Point3dl &pt) | 
| const_reference | operator() (const Point3dl &pt) const | 
| reference | operator() (const Point2d &pt) | 
| const_reference | operator() (const Point2d &pt) const | 
| reference | operator() (const Point2dl &pt) | 
| const_reference | operator() (const Point2dl &pt) const | 
| T | minimum () const | 
| T | maximum () const | 
| T | minIndex (int *x, int *y, int *z, int *t) const | 
| T | maxIndex (int *x, int *y, int *z, int *t) const | 
| void | fillBorder (const T &val) | 
| AimsData< T > | clone () const | 
| AimsData< T > | cross (const AimsData< T > &other) | 
| AimsData< T > & | transpose () | 
| int | borderWidth () const | 
| Size of the border.  More... | |
| int | oFirstPoint () const | 
| Offset from the start of the allocated memory to the first point.  More... | |
| int | oLine () const | 
| Offset between 2 consecutive lines.  More... | |
| int | oPointBetweenLine () const | 
| Offset between the end of a line and the start of the consecutive line.  More... | |
| int | oSlice () const | 
| Offset between 2 consecutive slices.  More... | |
| int | oLineBetweenSlice () const | 
| Number of lines between 2 consecutive slices.  More... | |
| int | oVolume () const | 
| Offset between 2 consecutive volumes.  More... | |
| int | oSliceBetweenVolume () const | 
| Number of slices between 2 consecutive volumes.  More... | |
| const std::vector< int > & | borders () const | 
| Sizes of the border.  More... | |
|  Public Member Functions inherited from carto::RCObject | |
| RCObject () | |
| RCObject (const RCObject &) | |
| RCObject & | operator= (const RCObject &) | 
| virtual | ~RCObject () | 
Definition at line 69 of file cartodatavolume.h.
| typedef const T* AimsData< T >::const_iterator | 
basic constant iterator
Definition at line 85 of file cartodatavolume.h.
| typedef const T& AimsData< T >::const_reference | 
basic constant reference
Definition at line 89 of file cartodatavolume.h.
| typedef ptrdiff_t AimsData< T >::difference_type | 
difference type
Definition at line 93 of file cartodatavolume.h.
basic iterator
Definition at line 83 of file cartodatavolume.h.
basic pointer
Definition at line 79 of file cartodatavolume.h.
4D-pointer
Definition at line 81 of file cartodatavolume.h.
basic reference
Definition at line 87 of file cartodatavolume.h.
size of the basic type
Definition at line 91 of file cartodatavolume.h.
| typedef T AimsData< T >::value_type | 
Definition at line 77 of file cartodatavolume.h.
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Definition at line 367 of file cartodatavolume.h.
References AimsData< T >::Private::header, and carto::rc_ptr< class >::reset().
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Definition at line 384 of file cartodatavolume.h.
References AimsData< T >::Private::header, and carto::rc_ptr< class >::reset().
Definition at line 402 of file cartodatavolume.h.
References AimsData< T >::Private::header.
Definition at line 413 of file cartodatavolume.h.
References carto::VolumeRef< class >::copyHeaderFrom(), AimsData< T >::dimT(), AimsData< T >::dimX(), AimsData< T >::dimY(), AimsData< T >::dimZ(), AimsData< T >::Private::header, carto::VolumeRef< class >::header(), carto::rc_ptr< class >::reset(), and AimsData< T >::volume().
Definition at line 440 of file cartodatavolume.h.
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Definition at line 448 of file cartodatavolume.h.
References AimsData< T >::Private::header.
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Definition at line 458 of file cartodatavolume.h.
References AimsData< T >::Private::header.
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Definition at line 687 of file cartodatavolume.h.
Referenced by aims::operator>>().
Definition at line 322 of file cartodatavolume.h.
References carto::VolumeRef< class >::begin().
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Definition at line 330 of file cartodatavolume.h.
References carto::VolumeRef< class >::begin().
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Sizes of the border.
Definition at line 1159 of file cartodatavolume.h.
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Size of the border.
Definition at line 1141 of file cartodatavolume.h.
Referenced by AimsData< T >::cross(), aims::triInf(), and aims::triSup().
Definition at line 1053 of file cartodatavolume.h.
References carto::DictionaryInterface::copyProperties(), AimsData< T >::Private::header, carto::VolumeRef< class >::header(), carto::Object::reference(), carto::rc_ptr< class >::reset(), and transfer().
Referenced by aims::decOrder(), and aims::incOrder().
Definition at line 1087 of file cartodatavolume.h.
References ASSERT, AimsData< T >::borderWidth(), AimsData< T >::dimT(), AimsData< T >::dimX(), AimsData< T >::dimY(), and AimsData< T >::dimZ().
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Definition at line 566 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), AimsData< T >::cross(), aims::decOrder(), aims::decSorting(), aims::incOrder(), aims::incSorting(), operator<<(), operator>>(), aims::GenesisReader< T >::read(), aims::transpose(), aims::triInf(), aims::triSup(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), and aims::TiffWriter< T >::write().
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Definition at line 542 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), AimsData< T >::cross(), aims::decOrder(), aims::decSorting(), aims::incOrder(), aims::incSorting(), operator<<(), operator>>(), aims::GenesisReader< T >::read(), aims::SpmReader< T >::read(), aims::TiffReader< T >::readFrame(), aims::transpose(), aims::triInf(), aims::triSup(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::ImasVolFormat< T >::write(), aims::JpegWriter< T >::writeFrame(), and aims::TiffWriter< T >::writeFrame().
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Definition at line 550 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), AimsData< T >::cross(), aims::decOrder(), aims::decSorting(), aims::incOrder(), aims::incSorting(), operator<<(), operator>>(), aims::GenesisReader< T >::read(), aims::SpmReader< T >::read(), aims::TiffReader< T >::readFrame(), aims::transpose(), aims::triInf(), aims::triSup(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::ImasVolFormat< T >::write(), aims::JpegWriter< T >::writeFrame(), and aims::TiffWriter< T >::writeFrame().
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Definition at line 558 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), AimsData< T >::cross(), aims::decOrder(), aims::decSorting(), aims::incOrder(), aims::incSorting(), operator<<(), operator>>(), aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), aims::SpmReader< T >::read(), aims::TiffReader< T >::read(), aims::TiffReader< T >::readFrame(), aims::transpose(), aims::triInf(), aims::triSup(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), and aims::TiffWriter< T >::write().
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Definition at line 360 of file cartodatavolume.h.
References carto::VolumeRef< class >::begin(), and carto::VolumeRef< class >::end().
Definition at line 338 of file cartodatavolume.h.
References carto::VolumeRef< class >::at(), carto::VolumeRef< class >::getSizeT(), carto::VolumeRef< class >::getSizeX(), carto::VolumeRef< class >::getSizeY(), and carto::VolumeRef< class >::getSizeZ().
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Definition at line 349 of file cartodatavolume.h.
References carto::VolumeRef< class >::at(), carto::VolumeRef< class >::getSizeT(), carto::VolumeRef< class >::getSizeX(), carto::VolumeRef< class >::getSizeY(), and carto::VolumeRef< class >::getSizeZ().
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Definition at line 1019 of file cartodatavolume.h.
References carto::VolumeRef< class >::at(), carto::const_ref< class >::isNull(), and carto::VolumeRef< class >::refVolume().
Referenced by AimsData< T >::transpose().
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Definition at line 704 of file cartodatavolume.h.
References carto::PointerObject< class >::getValue().
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Definition at line 695 of file cartodatavolume.h.
References AimsData< T >::header().
Referenced by AimsData< T >::header(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::ImasVolFormat< T >::write(), and AimsData< T >::Private::~Private().
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Definition at line 915 of file cartodatavolume.h.
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Definition at line 971 of file cartodatavolume.h.
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Definition at line 907 of file cartodatavolume.h.
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Definition at line 923 of file cartodatavolume.h.
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Offset from the start of the allocated memory to the first point.
Definition at line 1167 of file cartodatavolume.h.
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Offset between 2 consecutive lines.
Definition at line 1176 of file cartodatavolume.h.
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Number of lines between 2 consecutive slices.
Definition at line 1200 of file cartodatavolume.h.
| AimsData< T >::operator carto::rc_ptr< carto::Volume< T > > & | 
cast to Volume
Definition at line 300 of file cartodatavolume.h.
| AimsData< T >::operator carto::VolumeRef< T > & | 
Definition at line 314 of file cartodatavolume.h.
| AimsData< T >::operator const carto::rc_ptr< carto::Volume< T > > & | 
Definition at line 293 of file cartodatavolume.h.
| AimsData< T >::operator const carto::VolumeRef< T > & | 
Definition at line 307 of file cartodatavolume.h.
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Definition at line 872 of file cartodatavolume.h.
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Definition at line 881 of file cartodatavolume.h.
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Definition at line 890 of file cartodatavolume.h.
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Definition at line 899 of file cartodatavolume.h.
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Definition at line 836 of file cartodatavolume.h.
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Definition at line 845 of file cartodatavolume.h.
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Definition at line 854 of file cartodatavolume.h.
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Definition at line 863 of file cartodatavolume.h.
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Definition at line 800 of file cartodatavolume.h.
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Definition at line 809 of file cartodatavolume.h.
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Definition at line 818 of file cartodatavolume.h.
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Definition at line 827 of file cartodatavolume.h.
| reference AimsData< T >::operator() | ( | size_type | x = 0, | 
| size_type | y = 0, | ||
| size_type | z = 0, | ||
| size_type | t = 0 | ||
| ) | 
| const_reference AimsData< T >::operator() | ( | size_type | x = 0, | 
| size_type | y = 0, | ||
| size_type | z = 0, | ||
| size_type | t = 0 | ||
| ) | const | 
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 | inline | 
Definition at line 485 of file cartodatavolume.h.
References AimsData< T >::Private::header.
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Definition at line 469 of file cartodatavolume.h.
Referenced by aims::AimsFastAllocationData< T >::operator=().
Definition at line 501 of file cartodatavolume.h.
| const_reference AimsData< T >::operator[] | ( | size_type | n | ) | const | 
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Offset between the end of a line and the start of the consecutive line.
Definition at line 1184 of file cartodatavolume.h.
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Offset between 2 consecutive slices.
Definition at line 1192 of file cartodatavolume.h.
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Number of slices between 2 consecutive volumes.
Definition at line 1216 of file cartodatavolume.h.
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Offset between 2 consecutive volumes.
Definition at line 1208 of file cartodatavolume.h.
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Definition at line 721 of file cartodatavolume.h.
References carto::TypedObject< class >::clearProperties(), aims::PythonHeader::copy(), carto::TypedObject< class >::getProperty(), carto::const_ref< class >::isNull(), and carto::TypedObject< class >::setProperty().
Referenced by aims::FdfReader< T >::read(), aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), aims::SpmReader< T >::read(), aims::TiffReader< T >::read(), aims::ImasVolFormat< T >::read(), and AimsData< T >::transpose().
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Definition at line 658 of file cartodatavolume.h.
Referenced by aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), and aims::TiffReader< T >::read().
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Definition at line 622 of file cartodatavolume.h.
Referenced by aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), and aims::TiffReader< T >::read().
Definition at line 679 of file cartodatavolume.h.
References carto::VolumeRef< class >::getVoxelSize(), and AimsData< T >::volume().
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Definition at line 671 of file cartodatavolume.h.
Referenced by aims::Sinogram< T >::extractSino(), aims::Sinogram< T >::extractView(), aims::Sinogram< T >::getPlaneInDisplayMode(), aims::FdfReader< T >::read(), aims::SpmReader< T >::read(), and AimsData< T >::transpose().
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Definition at line 634 of file cartodatavolume.h.
Referenced by aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), and aims::TiffReader< T >::read().
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Definition at line 646 of file cartodatavolume.h.
Referenced by aims::GenesisReader< T >::read(), aims::JpegReader< T >::read(), and aims::TiffReader< T >::read().
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Definition at line 610 of file cartodatavolume.h.
Referenced by aims::hasSameSize(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), and aims::TiffWriter< T >::write().
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Definition at line 574 of file cartodatavolume.h.
Referenced by aims::hasSameSize(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::JpegWriter< T >::writeFrame(), and aims::TiffWriter< T >::writeFrame().
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Definition at line 586 of file cartodatavolume.h.
Referenced by aims::hasSameSize(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), aims::TiffWriter< T >::write(), aims::JpegWriter< T >::writeFrame(), and aims::TiffWriter< T >::writeFrame().
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Definition at line 598 of file cartodatavolume.h.
Referenced by aims::hasSameSize(), aims::JpegWriter< T >::write(), aims::SpmWriter< T >::write(), and aims::TiffWriter< T >::write().
Definition at line 1109 of file cartodatavolume.h.
References aims::PythonHeader::cloneHeader(), AimsData< T >::fillBorder(), carto::TypedObject< class >::hasProperty(), carto::TypedObject< class >::removeProperty(), AimsData< T >::setHeader(), and AimsData< T >::setSizeXYZT().
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Definition at line 526 of file cartodatavolume.h.
Referenced by AimsData< T >::AimsData(), carto::getObjectHeader(), aims::hasSameDim(), operator*(), operator+(), operator-(), aims::VolumeFormat< T >::read(), AimsData< T >::setSizeXYZT(), aims::SpmWriter< T >::write(), and aims::SomaIOAimsDataFormat< T >::write().
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Definition at line 534 of file cartodatavolume.h.