#include <anatomist/bucket/Bucket.h>

Inheritance diagram for anatomist::Bucket:

[legend]

Collaboration diagram for anatomist::Bucket:

[legend]

Public Member Functions
	Bucket (const char *filename=NULL)

	~Bucket ()

float	MinT () const
	Obsolete, deprecated. More...

float	MaxT () const
	Obsolete, deprecated. More...

virtual bool	boundingBox (std::vector< float > &bmin, std::vector< float > &bmax) const
	Fills bmin and bmax with the N-D bounding box extrema in the object's referential coordinates. More...

virtual bool	boundingBox2D (std::vector< float > &bmin, std::vector< float > &bmax) const
	Bounding box in 2D views mode. More...

virtual void	setSubBucketGeomExtrema (const Point3df &pmin=Point3df(0., 0., 0.), const Point3df &pmax=Point3df(0., 0., 0.))

virtual void	setGeomExtrema ()
	Scans the object internals and determines its geometry extrema. More...

virtual std::vector< float >	voxelSize () const
	Returns at least 4 sizes. For 3D objects, returns (1, 1, 1, 1) More...

virtual void	setVoxelSize (const std::vector< float > &vs)

virtual void	setBucketChanged ()

virtual bool	hasBucketChanged () const

void	setBucket (const aims::BucketMap< Void > &theBuck)

void	setBucket (carto::rc_ptr< aims::BucketMap< Void > > theBuck)

aims::BucketMap< Void > &	bucket ()

const aims::BucketMap< Void > &	bucket () const

carto::rc_ptr< aims::BucketMap< Void > >	rcBucket ()

size_t	createFacet (size_t t=0) const

virtual bool	Is2DObject ()

virtual bool	Is3DObject ()

const AimsSurface< 4, Void > *	surface (const ViewState &) const

void	setSurface (AimsSurfaceFacet *surf)

void	freeSurface ()

virtual unsigned	glNumVertex (const ViewState &) const

virtual const GLfloat *	glVertexArray (const ViewState &) const

virtual const GLfloat *	glNormalArray (const ViewState &) const
	normals array (optional), default=0 (no normals, flat shaded faces) More...

virtual unsigned	glNumPolygon (const ViewState &) const

virtual const GLuint *	glPolygonArray (const ViewState &) const

virtual unsigned	glPolygonSize (const ViewState &) const
	number of vertices per polygon (default = 3: triangles) More...

bool	allow2DRendering () const

void	setAllow2DRendering (bool x)
	when false, a bucket will always appear 3D More...

virtual bool	empty () const

void	insert (const aims::BucketMap< Void > &region)

void	erase (const aims::BucketMap< Void > &region)

void	meshSubBucket (aims::BucketMap< Void >::Bucket::const_iterator ibegin, aims::BucketMap< Void >::Bucket::const_iterator iend, AimsSurface< 4, Void > *surf, bool glonfly=false) const

void	meshSubBucket (const std::vector< std::pair< aims::BucketMap< Void >::Bucket::const_iterator, aims::BucketMap< Void >::Bucket::const_iterator > > &iv, AimsSurface< 4, Void > *surf, bool glonfly=false) const

virtual AObject *	objectAt (const std::vector< float > &pos, float tol=0)
	Find the object (sub-object) at given postion with a tolerence. More...

virtual bool	loadable () const

virtual bool	savable () const

virtual bool	save (const std::string &filename)

virtual bool	reload (const std::string &filename)
	Re-reads objects from disk. More...

virtual void	setInternalsChanged ()
	Notifies some underlying lower-level objects have changed. More...

virtual carto::GenericObject *	attributed ()

virtual const carto::GenericObject *	attributed () const

virtual Tree *	optionTree () const
	Menu tree for new options, see object/optionMatcher.h. More...

Public Member Functions inherited from anatomist::AGLObject
	AGLObject ()

virtual	~AGLObject ()

virtual const GLComponent *	glAPI () const

virtual GLComponent *	glAPI ()

virtual void	glSetChanged (glPart, bool=true) const

virtual void	glSetTexImageChanged (bool=true, unsigned tex=0) const

virtual void	glSetTexEnvChanged (bool=true, unsigned tex=0) const

virtual const Material *	glMaterial () const

virtual const AObjectPalette *	glPalette (unsigned tex=0) const

Public Member Functions inherited from anatomist::AObject
	AObject (const std::string &filename="")

virtual	~AObject ()
	AObject subclasses must call cleanup() in their destructor. More...

virtual AObject *	clone (bool shallow=true)
	Makes a copy of the object, with a duplicated object structure, palette and material, but which may share the underlying low-level data object (Aims object). More...

virtual const MObject *	mObjectAPI () const

virtual MObject *	mObjectAPI ()

int	type () const
	Object type identifier. More...

void	setType (int type)
	Method to set type id, because type() is not virtual. More...

int	id () const
	Unique ID assigned upon construction, but somewhat unused now... More...

std::string	name () const
	Name shown in control window. More...

std::string	fileName () const
	File name (if any) for loaded objects. More...

void	setName (const std::string &n)

void	setFileName (const std::string &filename)

void	setId (int id)

virtual int	isMultiObject () const
	maybe not necessary ?: we can use dynamic_cast instead More...

virtual bool	render (PrimList &, const ViewState &)
	rendering (generally 2D or 3D using OpenGL). More...

virtual void	internalUpdate ()
	Updates the state of the object. More...

virtual void	adjustPalette ()
	Creates or updates object palette according to object values (if needed) More...

virtual AObjectPalette *	palette ()
	Normally, getOrCreatePalette() should be used instead of this function in most cases. More...

virtual const AObjectPalette *	palette () const

virtual void	setPalette (const AObjectPalette &palette)

virtual const AObjectPalette *	getOrCreatePalette () const
	User normally calls this function. More...

virtual void	createDefaultPalette (const std::string &name="")
	function called by getOrCreatePalette() - overloadable, need not be called directly More...

virtual void	SetMaterial (const Material &mat)

virtual Material &	GetMaterial ()

virtual const Material &	material () const

Referential *	getReferential () const

AObject *	referentialInheritance () const
	if not null, the object referential is inherited from this object More...

virtual void	setReferentialInheritance (AObject *ao)

virtual void	setReferential (Referential *ref)

virtual AObject *	fallbackReferentialInheritance () const
	object to take referential from when no ref is assigned More...

const Referential *	previousReferential () const
	Referential that the object was in before the last change. More...

virtual ObjectMenu *	optionMenu () const

int	InMemory () const
	For objects loading only when needed (not used yet...) More...

int	Visible () const
	Visibility in control window. More...

void	SetVisibility (int v)

ParentList &	Parents ()
	List of multi-objects containing this one. Obsolete: use parents() More...

ParentList &	parents ()
	List of multi-objects containing this one. More...

const ParentList &	parents () const
	List of multi-objects containing this one. More...

virtual void	RegisterParent (MObject *pob)

virtual void	UnregisterParent (MObject *pob)

const std::set< AWindow * > &	WinList ()
	List of windows showing this object. More...

virtual void	registerWindow (AWindow *window)

virtual void	unregisterWindow (AWindow *window)

virtual bool	textured2D () const
	true if 2D rendering uses a textured plane (not a full openGL object) More...

virtual bool	isTransparent () const

virtual bool	renderingIsObserverDependent () const
	true only if the rendering (openGL) of the object changes with the observer position/orientation of the view (which is rare, but typically needed for Volume Rendering) More...

virtual int	CanBeDestroyed ()
	Allows / unallows destruction of object. More...

virtual void	setReferenceChanged ()

bool	hasReferenceChanged () const

virtual void	clearHasChangedFlags () const
	Reset has-changed flags. More...

virtual AObject *	objectAt (const std::vector< float > &pos, float tol, const Referential *orgref, const Point3df &orggeom)
	Same with origin window referential. More...

virtual void	SetExtrema ()
	Scans the object internals and determines its (texture) extrema values. More...

virtual bool	hasTexture () const
	Textured objects have values associated with a geometric coordinate. More...

virtual unsigned	dimTexture () const
	Number of texture values for a point. More...

virtual float	mixedTexValue (const std::vector< float > &pos, const Referential *orgRef) const
	Gets a "mixed" texture value at a given space / time location. More...

virtual float	mixedTexValue (const std::vector< float > &pos) const
	Same as above except that coordinates are not transformed but taken in object coordinates system. More...

virtual std::vector< float >	texValues (const std::vector< float > &pos, const Referential *orgRef) const
	Gets the array of texture values at a given location. More...

virtual std::vector< float >	texValues (const std::vector< float > &pos) const

virtual std::string	objectFullTypeName (void) const
	Get Object Full Type Name. More...

virtual bool	printTalairachCoord (const Point3df &, const Referential *) const
	should be replaced by a real referential More...

void	setHeaderOptions ()
	Set some object properties according to the header (.minf), such as material, palette etc. More...

virtual void	setProperties (carto::Object options)
	Same as setHeaderOptions() and used by it, allows passing a dictionary. More...

virtual void	storeHeaderOptions ()
	Store some object properties into the header (.minf), such as material, palette etc before saving the object. More...

virtual carto::Object	makeHeaderOptions () const
	get object properties into a generic object, such as material, palette etc before saving the object More...

long	loadDate () const
	Time the object was created, loaded or reloaded. More...

void	setLoadDate (long t)

virtual void	update (const Observable observable, void arg)
	This method is called whenever the observed object is changed. More...

bool	isCopy () const

void	setCopyFlag (bool x=true)

virtual std::string	toolTip () const
	tooltip displayed in 3D views (HTML). More...

carto::Object	aimsMeshFromGLComponent ()

Public Member Functions inherited from anatomist::Observable
	Observable ()
	Construct an Observable with zero observers. More...

virtual	~Observable ()
	does nothing More...

void	addObserver (Observer *observer)
	Adds an observer to the set of observers for this object. More...

void	deleteObserver (Observer *observer)
	Deletes an observer from the set of observers of this object. More...

void	deleteObservers ()
	Clears the observer list so that this object no longer has any observers (doesn't call any observer method - see notifyUnregisterObservers() for this ) More...

int	countObservers () const
	Returns the number of observers of this object. More...

virtual void	notifyObservers (void *arg=0)
	If this object has changed, as indicated by the hasChanged method, then notify all of its observers. More...

virtual void	notifyUnregisterObservers ()
	Notifies observable destruction to all observers and unregisters them. More...

bool	hasChanged () const
	Tests if this object has changed. More...

bool	obsHasChanged (int) const
	only valid during an Observer::update() More...

bool	obsHasChanged (const std::string &) const
	only valid during an Observer::update() More...

void	setChanged () const
	Indicates that this object has changed. More...

Public Member Functions inherited from carto::SharedObject
	SharedObject ()

	SharedObject (const SharedObject &x)

virtual	~SharedObject ()

SharedObject &	operator= (const SharedObject &)

bool	testDeletable ()

bool	tryDelete ()

Public Member Functions inherited from carto::WeakObject
void	attachWeakPtr (weak_ptr< T > &) const

void	detachWeakPtr (weak_ptr< T > &) const

void	attachWeakPtr (weak_shared_ptr< T > &) const

void	detachWeakPtr (weak_shared_ptr< T > &) const

virtual	~WeakObject ()

Public Member Functions inherited from carto::RCObject
	RCObject ()

	RCObject (const RCObject &)

RCObject &	operator= (const RCObject &)

virtual	~RCObject ()

Public Member Functions inherited from anatomist::Observer
virtual	~Observer ()

Public Member Functions inherited from anatomist::GLComponent
	GLComponent ()

virtual	~GLComponent ()

virtual const Sliceable *	sliceableAPI () const

virtual Sliceable *	sliceableAPI ()

virtual void	glClearHasChangedFlags () const

virtual bool	glHasChanged (glPart) const

void	setShader (const Shader &shader)

void	removeShader ()

void	setupShader ()
	create, setup, or remove the shader More...

const Shader *	getShader () const

Shader *	getShader ()

virtual void	setShaderParameters (const Shader &shader, const ViewState &state) const

virtual unsigned long	glMaxNumDisplayedPolygons () const
	Limit to the number of displayed polygons (default: 0, unlimited or ) global default value) More...

virtual void	glSetMaxNumDisplayedPolygons (unsigned long n)

virtual unsigned	glNumTextures () const

virtual unsigned	glNumTextures (const ViewState &) const

virtual glTextureMode	glTexMode (unsigned tex=0) const

virtual void	glSetTexMode (glTextureMode mode, unsigned tex=0)

virtual float	glTexRate (unsigned tex=0) const

virtual void	glSetTexRate (float rate, unsigned tex=0)

virtual glTextureFiltering	glTexFiltering (unsigned tex=0) const

virtual void	glSetTexFiltering (glTextureFiltering x, unsigned tex=0)

virtual glAutoTexturingMode	glAutoTexMode (unsigned tex=0) const

virtual void	glSetAutoTexMode (glAutoTexturingMode mode, unsigned tex=0)

virtual const float *	glAutoTexParams (unsigned coord=0, unsigned tex=0) const

virtual void	glSetAutoTexParams (const float *params, unsigned coord=0, unsigned tex=0)

virtual bool	glTexImageChanged (unsigned tex=0) const

virtual bool	glTexEnvChanged (unsigned tex=0) const

virtual GLint	glGLTexMode (unsigned tex=0) const

virtual GLint	glGLTexFiltering (unsigned tex=0) const

virtual void	glSetTexRGBInterpolation (bool x, unsigned tex=0)

virtual bool	glTexRGBInterpolation (unsigned tex=0) const

virtual unsigned	glDimTex (const ViewState &, unsigned tex=0) const
	texture dimension (1, 2 [or 3]) More...

virtual unsigned	glTexCoordSize (const ViewState &, unsigned tex=0) const
	texture array size (must be >= numVertex to work), defalut=0 More...

virtual const GLfloat *	glTexCoordArray (const ViewState &, unsigned tex=0) const

virtual const TexExtrema &	glTexExtrema (unsigned tex=0) const

virtual TexExtrema &	glTexExtrema (unsigned tex=0)

virtual GLPrimitives	glMainGLL (const ViewState &)

virtual void	glGarbageCollector (int nkept=-1)
	Frees unused display lists. More...

unsigned	glStateMemory () const
	Number of unused display lists in different states kept in memory (default: 4) More...

virtual void	glSetStateMemory (unsigned n)

virtual bool	glMakeBodyGLL (const ViewState &state, const GLList &gllist) const
	If you want to make a non-standard GL display list for the body geometry, overload this function to fill `gllist`. More...

virtual void	glBeforeBodyGLL (const ViewState &state, GLPrimitives &pl) const
	GL list to execute before the body is rendered. More...

virtual void	glAfterBodyGLL (const ViewState &state, GLPrimitives &pl) const
	GL list to execute after the body is rendered. More...

virtual carto::VolumeRef< AimsRGBA >	glBuildTexImage (const ViewState &state, unsigned tex, int dimx=-1, int dimy=-1, bool useTexScale=true) const
	If you make non-standard textures (ie not from a palette), overload this function. More...

virtual bool	glMakeTexImage (const ViewState &state, const GLTexture &gltex, unsigned tex) const
	If you make non-standard textures (ie not from a palette), overload this function to fill `gltex`. More...

virtual bool	glMakeTexEnvGLL (const ViewState &state, const GLList &gllist, unsigned tex) const

virtual GLPrimitives	glBodyGLL (const ViewState &state) const

virtual GLPrimitives	glMaterialGLL (const ViewState &state) const

virtual GLPrimitives	glTexNameGLL (const ViewState &, unsigned tex=0) const

virtual GLPrimitives	glTexEnvGLL (const ViewState &, unsigned tex=0) const

virtual void	glSetMainGLL (const std::string &state, GLPrimitives x)

virtual void	glSetBodyGLL (const std::string &state, RefGLItem x)

virtual void	glSetMaterialGLL (const std::string &state, RefGLItem x)

virtual void	glSetTexNameGLL (const std::string &state, RefGLItem x, unsigned tex=0)

virtual std::set< glTextureMode >	glAllowedTexModes (unsigned tex=0) const
	List of actually allowed texturing modes for this particular object. More...

virtual std::set< glTextureFiltering >	glAllowedTexFilterings (unsigned tex=0) const

virtual std::set< glAutoTexturingMode >	glAllowedAutoTexModes (unsigned tex=0) const

virtual bool	glAllowedTexRGBInterpolation (unsigned tex=0) const

virtual bool	glAllowedTexRate (unsigned tex=0) const

virtual carto::Object	debugInfo () const

int	glObjectID () const

virtual TexInfo &	glTexInfo (unsigned tex=0) const

Public Member Functions inherited from anatomist::PythonAObject
	PythonAObject ()

virtual	~PythonAObject ()

Static Public Attributes
static Tree *	_optionTree

Protected Member Functions
void	freeSurface () const

virtual void	setBucketChanged () const

virtual std::string	viewStateID (glPart part, const ViewState &) const
	Makes a unique ID from a viewstate. More...

Protected Member Functions inherited from anatomist::AObject
const PrimList &	primitives () const

PrimList &	primitives ()

virtual void	cleanup ()
	must be called by objects destructors - Must be explicitly called by each object destructor since it can call virtual functions More...

virtual void	clearReferentialInheritance ()
	sets the object to get referential from to null, unregister it More...

AObject *&	_referentialInheritance ()
	provide access to derived classes More...

virtual void	unregisterObservable (Observable *)
	Called when an observable is destroyed, only called by Observable: don't use this function directly. More...

	AObject (const AObject &)
	copy constructor, protected and used only to reimplement clone() More...

Protected Member Functions inherited from anatomist::Observable
void	clearChanged () const
	Indicates that this object has no longer changed, or that it has already notified all of its observers of its most recent change. More...

void	obsSetChanged (int, bool=true) const
	int-based change flags (use enums to address them) More...

void	obsSetChanged (const std::string &, bool=true) const
	string-based change flags More...

Protected Member Functions inherited from carto::SharedObject
void	disableRefCount ()

Protected Member Functions inherited from carto::WeakObject
	WeakObject ()

	WeakObject (const WeakObject &)

WeakObject &	operator= (const WeakObject &)

Protected Member Functions inherited from anatomist::Observer
virtual void	cleanupObserver ()
	call this function from inherited classes destructors. More...

virtual void	registerObservable (Observable *)
	only called by Observable: don't use this function directly More...

const std::set< Observable * > &	observed () const

Protected Member Functions inherited from anatomist::GLComponent
void	glAddTextures (unsigned ntex=1)

Protected Attributes
carto::rc_ptr< aims::BucketMap< Void > >	_bucket

int	_minX

int	_minY

int	_minZ

int	_minT

int	_maxX

int	_maxY

int	_maxZ

int	_maxT

Protected Attributes inherited from anatomist::AObject
int	_type
	Should be static in each object class. More...

int	_id

std::string	_name

std::string	_filename

std::set< AWindow * >	_winList

int	_inMemory

int	_visible

ParentList	_parents

Material	_material
	Should be a pointer: some objects don't have a material (2D objects) More...

Referential *	_referential
	Referentiel. More...

bool	_referenceHasChanged
	Reference has-changed flag. More...

AObjectPalette *	_palette
	Palette. More...

Additional Inherited Members
Public Types inherited from anatomist::AObject
enum	ObjectType { VOLUME, BUCKET, FACET, TRIANG, LIST, VECTOR, MAP, SET, GRAPH, GRAPHOBJECT, VOLSURF, MULTISURF, MULTIBUCKET, MULTIVOLUME, FUSION2D, FUSION3D, FASCICLE, FASCICLEGRAPH, TEXTURE, TEXSURFACE, FUSION2DMESH, VECTORFIELD, OTHER }
	Base object type identifiers. More...

typedef std::set< MObject * >	ParentList
	Storage type for parent objects (multi-objects containing this one) More...

typedef ObjectMenu (	ObjectMenuRegistrerFunction) (const AObject objtype, ObjectMenu menu)
	dynamic menu registration function More...

Public Types inherited from carto::RCObject
typedef int	RefCounterType

Public Types inherited from anatomist::GLComponent
enum	glTextureMode { glGEOMETRIC, glLINEAR, glREPLACE, glDECAL, glBLEND, glADD, glCOMBINE, glLINEAR_A_IF_A, glLINEAR_ON_DEFINED, glLINEAR_A_IF_B = glLINEAR_ON_DEFINED, glLINEAR_A_IF_NOT_A, glLINEAR_A_IF_NOT_B, glLINEAR_B_IF_A, glLINEAR_B_IF_B, glLINEAR_B_IF_NOT_A, glLINEAR_B_IF_NOT_B, glLINEAR_A_IF_A_ALPHA, glLINEAR_A_IF_NOT_B_ALPHA, glLINEAR_B_IF_B_ALPHA, glLINEAR_B_IF_NOT_A_ALPHA, glMAX_CHANNEL, glMIN_CHANNEL, glMAX_ALPHA, glMIN_ALPHA, glGEOMETRIC_SQRT, glGEOMETRIC_LIGHTEN }

enum	glTextureFiltering { glFILT_NEAREST, glFILT_LINEAR }

enum	glPart { glGENERAL, glBODY, glMATERIAL, glGEOMETRY, glPALETTE, glREFERENTIAL, glTEXIMAGE, glTEXENV, glNOPART, glTEXIMAGE_NUM, glTEXENV_NUM }
	GL object parts, each driving a GL list. More...

enum	glAutoTexturingMode { glTEX_MANUAL, glTEX_OBJECT_LINEAR, glTEX_EYE_LINEAR, glTEX_SPHERE_MAP, glTEX_REFLECTION_MAP, glTEX_NORMAL_MAP }

typedef ViewState::glSelectRenderMode	glSelectRenderMode

Static Public Member Functions inherited from anatomist::AObject
static std::list< AObject * >	load (const std::string &filename)
	Static object loader: creates an objects, loads its contents. More...

static bool	reload (AObject *object, bool onlyoutdated=false)
	Reads from disk again. More...

static int	registerObjectType (const std::string &id)
	Creates a new object type number and returns it. More...

static std::string	objectTypeName (int type)

static void	setObjectMenu (std::string type, carto::rc_ptr< ObjectMenu > om)

static carto::rc_ptr< ObjectMenu >	getObjectMenu (std::string type)

static std::map< std::string, carto::rc_ptr< ObjectMenu > > &	getObjectMenuMap ()

static void	addObjectMenuRegistration (ObjectMenuRegistrerFunction)

static void	addObjectMenuRegistration (ObjectMenuRegistrerClass *)

static void	cleanStatic ()
	cleanup static global variables (called when quitting anatomist) More...

Static Public Member Functions inherited from anatomist::GLComponent
static unsigned long	glGlobalMaxNumDisplayedPolygons ()

static void	glSetGlobalMaxNumDisplayedPolygons (unsigned long n)

static GLPrimitives	glHandleTransformation (const ViewState &vs, const Referential *myref)
	helper function used in AObject::render() More...

static GLPrimitives	glPopTransformation (const ViewState &vs, const Referential *myref)
	called after glHandleTransformation() and glMainGLL() to pop the transformation matrix More...

Static Protected Attributes inherited from anatomist::AObject
static std::map< std::string, int >	_objectTypes
	name-to-type map More...

static std::map< int, std::string >	_objectTypeNames
	type-to-name map More...

static std::map< std::string, carto::rc_ptr< ObjectMenu > >	_objectmenu_map
	Object Menu Map. More...

Detailed Description

Bucket class.

Definition at line 55 of file Bucket.h.

Constructor & Destructor Documentation

◆ Bucket()

anatomist::Bucket::Bucket ( const char * filename = NULL )

◆ ~Bucket()

anatomist::Bucket::~Bucket ( )

Member Function Documentation

◆ allow2DRendering()

bool anatomist::Bucket::allow2DRendering ( ) const

Referenced by glPolygonSize().

◆ attributed() [1/2]

virtual carto::GenericObject* anatomist::Bucket::attributed ( )

virtual

Implements anatomist::PythonAObject.

Referenced by savable().

◆ attributed() [2/2]

virtual const carto::GenericObject* anatomist::Bucket::attributed ( ) const

virtual

Reimplemented from anatomist::PythonAObject.

◆ boundingBox()

virtual bool anatomist::Bucket::boundingBox	(	std::vector< float > &	bmin,
		std::vector< float > &	bmax
	)		const

virtual

Fills bmin and bmax with the N-D bounding box extrema in the object's referential coordinates.

Changed in Anatomist 4.6. The older API was using Point3df instead of vector and informed only the spatial dimensions.

An object with no spatial information (a texture for instance) may still have time information. For this reason, the resulting bounding box should always have 4 components (at least), then 4th and additional ones should be valid, even if the function returns false (no spatial bounding box).

Returns: true if object has a "spatial" bounding box (x, y, z coordinates)

Reimplemented from anatomist::AObject.

Referenced by boundingBox2D(), and MaxT().

◆ boundingBox2D()

virtual bool anatomist::Bucket::boundingBox2D	(	std::vector< float > &	bmin,
		std::vector< float > &	bmax
	)		const

inlinevirtual

Bounding box in 2D views mode.

In mm, may be the same as boundingBox() if the object field of view is the same in 3D and 2D modes. It normally includes voxels size (for a volume, bmin will be -vs/2 where vs is the voxel size, for the 3 first coordinates).

The default implementation just calls boundingBox().

Reimplemented from anatomist::AObject.

Definition at line 65 of file Bucket.h.

References boundingBox(), hasBucketChanged(), setBucket(), setBucketChanged(), setGeomExtrema(), setSubBucketGeomExtrema(), setVoxelSize(), and voxelSize().

◆ bucket() [1/2]

aims::BucketMap<Void>& anatomist::Bucket::bucket ( )

inline

Definition at line 79 of file Bucket.h.

References _bucket.

◆ bucket() [2/2]

const aims::BucketMap<Void>& anatomist::Bucket::bucket ( ) const

inline

Definition at line 80 of file Bucket.h.

References _bucket.

◆ createFacet()

size_t anatomist::Bucket::createFacet ( size_t t = 0 ) const

Referenced by rcBucket().

◆ empty()

virtual bool anatomist::Bucket::empty ( ) const

virtual

Referenced by glPolygonSize().

◆ erase()

void anatomist::Bucket::erase ( const aims::BucketMap< Void > & region )

Referenced by glPolygonSize().

◆ freeSurface() [1/2]

void anatomist::Bucket::freeSurface ( )

Referenced by Is3DObject().

◆ freeSurface() [2/2]

void anatomist::Bucket::freeSurface ( ) const

protected

◆ glNormalArray()

virtual const GLfloat* anatomist::Bucket::glNormalArray ( const ViewState & ) const

virtual

normals array (optional), default=0 (no normals, flat shaded faces)

Reimplemented from anatomist::GLComponent.

Referenced by Is3DObject().

◆ glNumPolygon()

virtual unsigned anatomist::Bucket::glNumPolygon ( const ViewState & ) const

virtual

Reimplemented from anatomist::GLComponent.

Referenced by Is3DObject().

◆ glNumVertex()

virtual unsigned anatomist::Bucket::glNumVertex ( const ViewState & ) const

virtual

Reimplemented from anatomist::GLComponent.

Referenced by Is3DObject().

◆ glPolygonArray()

virtual const GLuint* anatomist::Bucket::glPolygonArray ( const ViewState & ) const

virtual

Reimplemented from anatomist::GLComponent.

Referenced by Is3DObject().

◆ glPolygonSize()

virtual unsigned anatomist::Bucket::glPolygonSize ( const ViewState & ) const

inlinevirtual

number of vertices per polygon (default = 3: triangles)

Reimplemented from anatomist::GLComponent.

Definition at line 94 of file Bucket.h.

References allow2DRendering(), empty(), erase(), insert(), meshSubBucket(), objectAt(), and setAllow2DRendering().

◆ glVertexArray()

virtual const GLfloat* anatomist::Bucket::glVertexArray ( const ViewState & ) const

virtual

Reimplemented from anatomist::GLComponent.

Referenced by Is3DObject().

◆ hasBucketChanged()

virtual bool anatomist::Bucket::hasBucketChanged ( ) const

virtual

Referenced by boundingBox2D().

◆ insert()

void anatomist::Bucket::insert ( const aims::BucketMap< Void > & region )

Referenced by glPolygonSize().

◆ Is2DObject()

virtual bool anatomist::Bucket::Is2DObject ( )

virtual

Implements anatomist::AObject.

Referenced by rcBucket().

◆ Is3DObject()

virtual bool anatomist::Bucket::Is3DObject ( )

inlinevirtual

Implements anatomist::AObject.

Definition at line 85 of file Bucket.h.

References freeSurface(), glNormalArray(), glNumPolygon(), glNumVertex(), glPolygonArray(), glVertexArray(), setSurface(), and surface().

◆ loadable()

virtual bool anatomist::Bucket::loadable ( ) const

inlinevirtual

Reimplemented from anatomist::AObject.

Definition at line 112 of file Bucket.h.

◆ MaxT()

float anatomist::Bucket::MaxT ( ) const

inlinevirtual

Obsolete, deprecated.

Reimplemented from anatomist::AObject.

Definition at line 62 of file Bucket.h.

References _maxT, and boundingBox().

◆ meshSubBucket() [1/2]

void anatomist::Bucket::meshSubBucket	(	aims::BucketMap< Void >::Bucket::const_iterator	ibegin,
		aims::BucketMap< Void >::Bucket::const_iterator	iend,
		AimsSurface< 4, Void > *	surf,
		bool	glonfly = `false`
	)		const

inline

Definition at line 141 of file Bucket.h.

Referenced by glPolygonSize().

◆ meshSubBucket() [2/2]

void anatomist::Bucket::meshSubBucket	(	const std::vector< std::pair< aims::BucketMap< Void >::Bucket::const_iterator, aims::BucketMap< Void >::Bucket::const_iterator > > &	iv,
		AimsSurface< 4, Void > *	surf,
		bool	glonfly = `false`
	)		const

◆ MinT()

float anatomist::Bucket::MinT ( ) const

inlinevirtual

Obsolete, deprecated.

Reimplemented from anatomist::AObject.

Definition at line 61 of file Bucket.h.

References _minT.

◆ objectAt()

virtual AObject* anatomist::Bucket::objectAt	(	const std::vector< float > &	pos,
		float	tol = `0`
	)

virtual

Find the object (sub-object) at given postion with a tolerence.

Returns: 0 if not found

Reimplemented from anatomist::AObject.

Referenced by glPolygonSize().

◆ optionTree()

virtual Tree* anatomist::Bucket::optionTree ( ) const

virtual

Menu tree for new options, see object/optionMatcher.h.

Reimplemented from anatomist::AObject.

Referenced by savable().

◆ rcBucket()

carto::rc_ptr<aims::BucketMap<Void> > anatomist::Bucket::rcBucket ( )

inline

Definition at line 81 of file Bucket.h.

References _bucket, createFacet(), and Is2DObject().

◆ reload()

virtual bool anatomist::Bucket::reload ( const std::string & filename )

virtual

Re-reads objects from disk.

Only called if loadable() is true and fileName() is not empty. A new filename can be passed to the reload function, so that files uncompressed by the ObjectReader in temporary locations can be processed. Overload this function in inherited classes to implement it.

If onlyoutdated is true, reloading will only be done if the files containing the object have been modified since the object has been created/loaded/saved

Reimplemented from anatomist::AObject.

Referenced by savable().

◆ savable()

virtual bool anatomist::Bucket::savable ( ) const

inlinevirtual

Reimplemented from anatomist::AObject.

Definition at line 113 of file Bucket.h.

References attributed(), optionTree(), reload(), save(), and setInternalsChanged().

◆ save()

virtual bool anatomist::Bucket::save ( const std::string & filename )

virtual

Reimplemented from anatomist::AObject.

Referenced by savable().

◆ setAllow2DRendering()

void anatomist::Bucket::setAllow2DRendering ( bool x )

when false, a bucket will always appear 3D

Referenced by glPolygonSize().

◆ setBucket() [1/2]

void anatomist::Bucket::setBucket ( const aims::BucketMap< Void > & theBuck )

Referenced by boundingBox2D().

◆ setBucket() [2/2]

void anatomist::Bucket::setBucket ( carto::rc_ptr< aims::BucketMap< Void > > theBuck )

◆ setBucketChanged() [1/2]

virtual void anatomist::Bucket::setBucketChanged ( )

virtual

Referenced by boundingBox2D().

◆ setBucketChanged() [2/2]

virtual void anatomist::Bucket::setBucketChanged ( ) const

protectedvirtual

◆ setGeomExtrema()

virtual void anatomist::Bucket::setGeomExtrema ( )

virtual

Scans the object internals and determines its geometry extrema.

Reimplemented from anatomist::AObject.

Referenced by boundingBox2D().

◆ setInternalsChanged()

virtual void anatomist::Bucket::setInternalsChanged ( )

virtual

Notifies some underlying lower-level objects have changed.

Useful especially after an underlying AIMS object has been modified

Reimplemented from anatomist::AObject.

Referenced by savable().

◆ setSubBucketGeomExtrema()

virtual void anatomist::Bucket::setSubBucketGeomExtrema	(	const Point3df &	pmin = `Point3df(0., 0., 0.)`,
		const Point3df &	pmax = `Point3df(0., 0., 0.)`
	)

virtual

Referenced by boundingBox2D().

◆ setSurface()

void anatomist::Bucket::setSurface ( AimsSurfaceFacet * surf )

Referenced by Is3DObject().

◆ setVoxelSize()

virtual void anatomist::Bucket::setVoxelSize ( const std::vector< float > & vs )

virtual

Reimplemented from anatomist::AObject.

Referenced by boundingBox2D().

◆ surface()

const AimsSurface<4, Void>* anatomist::Bucket::surface ( const ViewState & ) const

Referenced by Is3DObject().

◆ viewStateID()

virtual std::string anatomist::Bucket::viewStateID	(	glPart	part,
		const ViewState &
	)		const

protectedvirtual

Makes a unique ID from a viewstate.

The ID must be unique within the GLComponent instance and for the part part. Depending on the aspects of the viewstate to take into account, subclasses may have to overload it.

For instance, a mesh may build an ID only taking time into account, whereas a volume slice must also code the slice position and orientation into the ID.

Reimplemented from anatomist::AGLObject.

◆ voxelSize()

virtual std::vector<float> anatomist::Bucket::voxelSize ( ) const

virtual

Returns at least 4 sizes. For 3D objects, returns (1, 1, 1, 1)

Reimplemented from anatomist::AObject.

Referenced by boundingBox2D().

Member Data Documentation

◆ _bucket

carto::rc_ptr<aims::BucketMap<Void> > anatomist::Bucket::_bucket

protected

Definition at line 125 of file Bucket.h.

Referenced by bucket(), and rcBucket().

◆ _maxT

int anatomist::Bucket::_maxT

mutableprotected

Definition at line 127 of file Bucket.h.

Referenced by MaxT().

◆ _maxX

int anatomist::Bucket::_maxX

mutableprotected

Definition at line 127 of file Bucket.h.

◆ _maxY

int anatomist::Bucket::_maxY

mutableprotected

Definition at line 127 of file Bucket.h.

◆ _maxZ

int anatomist::Bucket::_maxZ

mutableprotected

Definition at line 127 of file Bucket.h.

◆ _minT

int anatomist::Bucket::_minT

mutableprotected

Definition at line 126 of file Bucket.h.

Referenced by MinT().

◆ _minX

int anatomist::Bucket::_minX

mutableprotected

Definition at line 126 of file Bucket.h.

◆ _minY

int anatomist::Bucket::_minY

mutableprotected

Definition at line 126 of file Bucket.h.

◆ _minZ

int anatomist::Bucket::_minZ

mutableprotected

Definition at line 126 of file Bucket.h.

◆ _optionTree

Tree* anatomist::Bucket::_optionTree

static

Definition at line 122 of file Bucket.h.

The documentation for this class was generated from the following file:

anatomist/bucket/Bucket.h

Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Bucket()

◆ ~Bucket()

Member Function Documentation

◆ allow2DRendering()

◆ attributed() [1/2]

◆ attributed() [2/2]

◆ boundingBox()

◆ boundingBox2D()

◆ bucket() [1/2]

◆ bucket() [2/2]

◆ createFacet()

◆ empty()

◆ erase()

◆ freeSurface() [1/2]

◆ freeSurface() [2/2]

◆ glNormalArray()

◆ glNumPolygon()

◆ glNumVertex()

◆ glPolygonArray()

◆ glPolygonSize()

◆ glVertexArray()

◆ hasBucketChanged()

◆ insert()

◆ Is2DObject()

◆ Is3DObject()

◆ loadable()

◆ MaxT()

◆ meshSubBucket() [1/2]

◆ meshSubBucket() [2/2]

◆ MinT()

◆ objectAt()

◆ optionTree()

◆ rcBucket()

◆ reload()

◆ savable()

◆ save()

◆ setAllow2DRendering()

◆ setBucket() [1/2]

◆ setBucket() [2/2]

◆ setBucketChanged() [1/2]

◆ setBucketChanged() [2/2]

◆ setGeomExtrema()

◆ setInternalsChanged()

◆ setSubBucketGeomExtrema()

◆ setSurface()

◆ setVoxelSize()

◆ surface()

◆ viewStateID()

◆ voxelSize()

Member Data Documentation

◆ _bucket

◆ _maxT

◆ _maxX

◆ _maxY

◆ _maxZ

◆ _minT

◆ _minX

◆ _minY

◆ _minZ

◆ _optionTree