Anatomist object which contains two volumes: one for the MRI anatomic image, and another for the functional data (fMRI, PET...) More...

#include <anatomist/mobject/Fusion2D.h>

Inheritance diagram for anatomist::Fusion2D:

[legend]

Collaboration diagram for anatomist::Fusion2D:

[legend]

Public Member Functions
	Fusion2D (const std::vector< AObject * > &obj, bool dynamic=false)
	The dynamic parameter has been added in Anatomist 4.6.1 and is false by default. More...

virtual	~Fusion2D ()

virtual const GLComponent *	glAPI () const

virtual GLComponent *	glAPI ()

virtual const Sliceable *	sliceableAPI () const

virtual Sliceable *	sliceableAPI ()

AObject *	mri () const

virtual int	MType () const
	Precise type of multi-object. More...

virtual std::vector< float >	voxelSize () const
	Returns at least 4 sizes. For 3D objects, returns (1, 1, 1, 1) More...

virtual std::vector< float >	glVoxelSize () const

virtual std::vector< float >	glMin2D () const

virtual std::vector< float >	glMax2D () const

virtual AObject *	fallbackReferentialInheritance () const
	object to take referential from when no ref is assigned More...

virtual bool	CanRemove (AObject *obj)

virtual bool	render (PrimList &, const ViewState &)
	rendering (generally 2D or 3D using OpenGL). More...

virtual bool	update2DTexture (AImage &, const Point3df &posbase, const SliceViewState &, unsigned tex=0) const
	this function must be overloaded to actually fill the slice image More...

virtual bool	Is2DObject ()
	Can be displayed in 2D windows. More...

virtual bool	Is3DObject ()
	Can't be displayed in 3D windows. More...

virtual bool	textured2D () const
	true if 2D rendering uses a textured plane (not a full openGL object) More...

void	moveVolume (AObject *vol, int dstpos)
	move the sub-object `vol` to position `dstpos`. More...

void	moveVolume (int srcpos, int dstpos)
	move the sub-object at position `srcpos` to position `dstpos`. More...

void	reorder (const std::vector< AObject * > &)
	Reorder sub-objects. More...

virtual void	glClearHasChangedFlags () const

virtual void	glSetChanged (glPart, bool=true) const

virtual void	glSetTexMode (glTextureMode mode, unsigned tex=0)

virtual void	glSetTexImageChanged (bool x=true, unsigned tex=0) const

virtual void	glSetTexEnvChanged (bool x=true, unsigned tex=0) const

unsigned	glNumTextures (const ViewState &) const

std::set< glTextureMode >	glAllowedTexModes (unsigned tex=0) const
	List of actually allowed texturing modes for this particular object. More...

virtual void	update (const Observable observable, void arg)
	This class is an Observer of each of the AObject it groups. More...

virtual const AObjectPalette *	glPalette (unsigned tex=0) const

const Referential *	getReferential () const

virtual bool	hasTexture () const
	Textured objects have values associated with a geometric coordinate. More...

virtual unsigned	dimTexture () const
	Number of texture values for a point. More...

virtual float	mixedTexValue (const std::vector< float > &pos) const
	Same as above except that coordinates are not transformed but taken in object coordinates system. More...

virtual float	mixedTexValue (const std::vector< float > &pos, const Referential *orgRef) const
	Gets a "mixed" texture value at a given space / time location. More...

virtual std::vector< float >	texValues (const std::vector< float > &pos) const

virtual std::vector< float >	texValues (const std::vector< float > &pos, const Referential *orgRef) const
	Gets the array of texture values at a given location. More...

virtual float	mixedValue (const std::vector< float > &pv) const

virtual const Material *	glMaterial () const

virtual bool	isTransparent () const

bool	isDynamic () const

void	setDynamic (bool dynamic)

virtual Tree *	optionTree () const
	Menu tree for new options, see object/optionMatcher.h. More...

Public Member Functions inherited from anatomist::ObjectVector
	ObjectVector ()

virtual	~ObjectVector ()

virtual size_t	size () const

virtual iterator	begin ()

virtual const_iterator	begin () const

virtual iterator	end ()

virtual const_iterator	end () const

virtual void	insert (AObject *)

virtual void	insert (AObject *, int pos)

virtual void	insert (const carto::shared_ptr< AObject > &, int pos=-1)

virtual const_iterator	find (const AObject *) const

virtual const_iterator	find (const carto::shared_ptr< AObject > &) const

virtual void	erase (iterator &)

Public Member Functions inherited from anatomist::MObject
	MObject ()

virtual	~MObject ()

virtual const MObject *	mObjectAPI () const

virtual MObject *	mObjectAPI ()

int	isMultiObject () const
	maybe not necessary ?: we can use dynamic_cast instead More...

virtual void	setReferential (Referential *ref)

virtual void	setReferentialInheritance (AObject *)

void	eraseObject (AObject *obj)

virtual float	MinT () const
	Obsolete, deprecated. More...

virtual float	MaxT () const
	Obsolete, deprecated. More...

virtual bool	boundingBox2D (std::vector< float > &bmin, std::vector< float > &bmax) const
	Bounding box in 2D views mode. More...

virtual bool	boundingBox (std::vector< float > &bmin, std::vector< float > &bmax) const
	Fills bmin and bmax with the N-D bounding box extrema in the object's referential coordinates. More...

virtual AObject *	objectAt (const std::vector< float > &pos, float tol=0)
	Find the object (sub-object) at given postion with a tolerence. More...

virtual std::list< AObject * >	renderedSubObjects (const ViewState &) const
	lis of objects displayed in render() in a default implementation More...

virtual bool	renderingIsObserverDependent () const
	true only if the rendering (openGL) of the object changes with the observer position/orientation of the view (which is rare, but typically needed for Volume Rendering) More...

virtual void	setContentChanged () const

bool	hasContentChanged () const

virtual void	clearHasChangedFlags () const

virtual void	SetMaterial (const Material &mat)

virtual void	setPalette (const AObjectPalette &pal)

virtual bool	shouldRemoveChildrenWithMe () const
	tells whether children objects should be removed from views when this MObject is removed from a view. More...

virtual std::list< AObject * >	generativeChildren () const
	Children objects which have been used to build the current MObject. More...

Public Member Functions inherited from anatomist::AObject
	AObject (const std::string &filename="")

virtual	~AObject ()
	AObject subclasses must call cleanup() in their destructor. More...

virtual AObject *	clone (bool shallow=true)
	Makes a copy of the object, with a duplicated object structure, palette and material, but which may share the underlying low-level data object (Aims object). More...

int	type () const
	Object type identifier. More...

void	setType (int type)
	Method to set type id, because type() is not virtual. More...

int	id () const
	Unique ID assigned upon construction, but somewhat unused now... More...

std::string	name () const
	Name shown in control window. More...

std::string	fileName () const
	File name (if any) for loaded objects. More...

void	setName (const std::string &n)

void	setFileName (const std::string &filename)

void	setId (int id)

virtual void	setVoxelSize (const std::vector< float > &)

virtual void	internalUpdate ()
	Updates the state of the object. More...

virtual void	adjustPalette ()
	Creates or updates object palette according to object values (if needed) More...

virtual AObjectPalette *	palette ()
	Normally, getOrCreatePalette() should be used instead of this function in most cases. More...

virtual const AObjectPalette *	palette () const

virtual const AObjectPalette *	getOrCreatePalette () const
	User normally calls this function. More...

virtual void	createDefaultPalette (const std::string &name="")
	function called by getOrCreatePalette() - overloadable, need not be called directly More...

virtual Material &	GetMaterial ()

virtual const Material &	material () const

Referential *	getReferential () const

AObject *	referentialInheritance () const
	if not null, the object referential is inherited from this object More...

const Referential *	previousReferential () const
	Referential that the object was in before the last change. More...

virtual ObjectMenu *	optionMenu () const

int	InMemory () const
	For objects loading only when needed (not used yet...) More...

int	Visible () const
	Visibility in control window. More...

void	SetVisibility (int v)

ParentList &	Parents ()
	List of multi-objects containing this one. Obsolete: use parents() More...

ParentList &	parents ()
	List of multi-objects containing this one. More...

const ParentList &	parents () const
	List of multi-objects containing this one. More...

virtual void	RegisterParent (MObject *pob)

virtual void	UnregisterParent (MObject *pob)

const std::set< AWindow * > &	WinList ()
	List of windows showing this object. More...

virtual void	registerWindow (AWindow *window)

virtual void	unregisterWindow (AWindow *window)

virtual bool	IsFusion2DAllowed ()

virtual int	CanBeDestroyed ()
	Allows / unallows destruction of object. More...

virtual void	setReferenceChanged ()

bool	hasReferenceChanged () const

virtual void	setInternalsChanged ()
	Notifies some underlying lower-level objects have changed. More...

bool	userModified () const
	if the object has been modified by user interaction, and needs saving More...

void	setUserModified (bool state=true)
	if the object has been modified by user interaction, and needs saving More...

virtual AObject *	objectAt (const std::vector< float > &pos, float tol, const Referential *orgref, const Point3df &orggeom)
	Same with origin window referential. More...

virtual void	setGeomExtrema ()
	Scans the object internals and determines its geometry extrema. More...

virtual void	SetExtrema ()
	Scans the object internals and determines its (texture) extrema values. More...

virtual bool	loadable () const

virtual bool	savable () const

virtual bool	reload (const std::string &filename)
	Re-reads objects from disk. More...

virtual std::string	objectFullTypeName (void) const
	Get Object Full Type Name. More...

bool	save (const std::string &filename, bool onlyIfModified)

virtual bool	save (const std::string &filename)

virtual bool	printTalairachCoord (const Point3df &, const Referential *) const
	should be replaced by a real referential More...

void	setHeaderOptions ()
	Set some object properties according to the header (.minf), such as material, palette etc. More...

virtual void	setProperties (carto::Object options)
	Same as setHeaderOptions() and used by it, allows passing a dictionary. More...

virtual void	storeHeaderOptions ()
	Store some object properties into the header (.minf), such as material, palette etc before saving the object. More...

virtual carto::Object	makeHeaderOptions () const
	get object properties into a generic object, such as material, palette etc before saving the object More...

long	loadDate () const
	Time the object was created, loaded or reloaded. More...

void	setLoadDate (long t)

bool	isCopy () const

void	setCopyFlag (bool x=true)

virtual std::string	toolTip () const
	tooltip displayed in 3D views (HTML). More...

carto::Object	aimsMeshFromGLComponent ()

Public Member Functions inherited from anatomist::Observable
	Observable ()
	Construct an Observable with zero observers. More...

virtual	~Observable ()
	does nothing More...

void	addObserver (Observer *observer)
	Adds an observer to the set of observers for this object. More...

void	deleteObserver (Observer *observer)
	Deletes an observer from the set of observers of this object. More...

void	deleteObservers ()
	Clears the observer list so that this object no longer has any observers (doesn't call any observer method - see notifyUnregisterObservers() for this ) More...

int	countObservers () const
	Returns the number of observers of this object. More...

virtual void	notifyObservers (void *arg=0)
	If this object has changed, as indicated by the hasChanged method, then notify all of its observers. More...

virtual void	notifyUnregisterObservers ()
	Notifies observable destruction to all observers and unregisters them. More...

bool	hasChanged () const
	Tests if this object has changed. More...

bool	obsHasChanged (int) const
	only valid during an Observer::update() More...

bool	obsHasChanged (const std::string &) const
	only valid during an Observer::update() More...

void	setChanged () const
	Indicates that this object has changed. More...

Public Member Functions inherited from carto::SharedObject
	SharedObject ()

	SharedObject (const SharedObject &x)

virtual	~SharedObject ()

SharedObject &	operator= (const SharedObject &)

bool	testDeletable ()

bool	tryDelete ()

Public Member Functions inherited from carto::WeakObject
void	attachWeakPtr (weak_ptr< T > &) const

void	detachWeakPtr (weak_ptr< T > &) const

void	attachWeakPtr (weak_shared_ptr< T > &) const

void	detachWeakPtr (weak_shared_ptr< T > &) const

virtual	~WeakObject ()

Public Member Functions inherited from carto::RCObject
	RCObject ()

	RCObject (const RCObject &)

RCObject &	operator= (const RCObject &)

virtual	~RCObject ()

Public Member Functions inherited from anatomist::Observer
virtual	~Observer ()

Public Member Functions inherited from anatomist::Sliceable
	Sliceable ()

virtual	~Sliceable ()

virtual unsigned	glNumVertex (const ViewState &) const

virtual const GLfloat *	glVertexArray (const ViewState &) const

virtual const GLfloat *	glNormalArray (const ViewState &state) const
	normals array (optional), default=0 (no normals, flat shaded faces) More...

virtual unsigned	glPolygonSize (const ViewState &) const
	number of vertices per polygon (default = 3: triangles) More...

virtual unsigned	glNumPolygon (const ViewState &) const

virtual const GLuint *	glPolygonArray (const ViewState &) const

virtual unsigned	glDimTex (const ViewState &, unsigned tex=0) const
	texture dimension (1, 2 [or 3]) More...

virtual unsigned	glTexCoordSize (const ViewState &, unsigned tex=0) const
	texture array size (must be >= numVertex to work), defalut=0 More...

virtual const GLfloat *	glTexCoordArray (const ViewState &, unsigned tex=0) const

virtual carto::VolumeRef< AimsRGBA >	glBuildTexImage (const ViewState &state, unsigned tex, int dimx=-1, int dimy=-1, bool useTexScale=true) const
	If you make non-standard textures (ie not from a palette), overload this function. More...

virtual bool	glMakeTexImage (const ViewState &state, const GLTexture &gltex, unsigned tex) const
	If you make non-standard textures (ie not from a palette), overload this function to fill `gltex`. More...

virtual carto::VolumeRef< AimsRGBA >	rgbaVolume (const SliceViewState *=0, int tex=0) const
	fills a resampled RGBA volume More...

virtual void	rgbaVolume (carto::Volume< AimsRGBA > &, const SliceViewState *=0, int tex=0) const
	same as the other rgbaVolume() but fills an already allocated volume More...

virtual bool	glAllowedTexRGBInterpolation (unsigned tex=0) const

virtual std::string	viewStateID (glPart part, const ViewState &) const
	Makes a unique ID from a viewstate. More...

Public Member Functions inherited from anatomist::GLComponent
	GLComponent ()

virtual	~GLComponent ()

void	clearLists ()

virtual bool	glHasChanged (glPart) const

void	setShader (const Shader &shader)

void	removeShader ()

void	setupShader ()
	create, setup, or remove the shader More...

const Shader *	getShader () const

Shader *	getShader ()

virtual void	setShaderParameters (const Shader &shader, const ViewState &state) const

virtual unsigned long	glMaxNumDisplayedPolygons () const
	Limit to the number of displayed polygons (default: 0, unlimited or ) global default value) More...

virtual void	glSetMaxNumDisplayedPolygons (unsigned long n)

virtual unsigned	glNumTextures () const

virtual glTextureMode	glTexMode (unsigned tex=0) const

virtual float	glTexRate (unsigned tex=0) const

virtual void	glSetTexRate (float rate, unsigned tex=0)

virtual glTextureFiltering	glTexFiltering (unsigned tex=0) const

virtual void	glSetTexFiltering (glTextureFiltering x, unsigned tex=0)

virtual glAutoTexturingMode	glAutoTexMode (unsigned tex=0) const

virtual void	glSetAutoTexMode (glAutoTexturingMode mode, unsigned tex=0)

virtual const float *	glAutoTexParams (unsigned coord=0, unsigned tex=0) const

virtual void	glSetAutoTexParams (const float *params, unsigned coord=0, unsigned tex=0)

virtual bool	glTexImageChanged (unsigned tex=0) const

virtual bool	glTexEnvChanged (unsigned tex=0) const

virtual GLint	glGLTexMode (unsigned tex=0) const

virtual GLint	glGLTexFiltering (unsigned tex=0) const

virtual void	glSetTexRGBInterpolation (bool x, unsigned tex=0)

virtual bool	glTexRGBInterpolation (unsigned tex=0) const

virtual const TexExtrema &	glTexExtrema (unsigned tex=0) const

virtual TexExtrema &	glTexExtrema (unsigned tex=0)

virtual GLPrimitives	glMainGLL (const ViewState &)

virtual void	glGarbageCollector (int nkept=-1)
	Frees unused display lists. More...

unsigned	glStateMemory () const
	Number of unused display lists in different states kept in memory (default: 4) More...

virtual void	glSetStateMemory (unsigned n)

virtual bool	glMakeBodyGLL (const ViewState &state, const GLList &gllist) const
	If you want to make a non-standard GL display list for the body geometry, overload this function to fill `gllist`. More...

virtual void	glBeforeBodyGLL (const ViewState &state, GLPrimitives &pl) const
	GL list to execute before the body is rendered. More...

virtual void	glAfterBodyGLL (const ViewState &state, GLPrimitives &pl) const
	GL list to execute after the body is rendered. More...

virtual bool	glMakeTexEnvGLL (const ViewState &state, const GLList &gllist, unsigned tex) const

virtual GLPrimitives	glBodyGLL (const ViewState &state) const

virtual GLPrimitives	glMaterialGLL (const ViewState &state) const

virtual GLPrimitives	glTexNameGLL (const ViewState &, unsigned tex=0) const

virtual GLPrimitives	glTexEnvGLL (const ViewState &, unsigned tex=0) const

virtual void	glSetMainGLL (const std::string &state, GLPrimitives x)

virtual void	glSetBodyGLL (const std::string &state, RefGLItem x)

virtual void	glSetMaterialGLL (const std::string &state, RefGLItem x)

virtual void	glSetTexNameGLL (const std::string &state, RefGLItem x, unsigned tex=0)

virtual std::set< glTextureFiltering >	glAllowedTexFilterings (unsigned tex=0) const

virtual std::set< glAutoTexturingMode >	glAllowedAutoTexModes (unsigned tex=0) const

virtual bool	glAllowedTexRate (unsigned tex=0) const

virtual carto::Object	debugInfo () const

int	glObjectID () const

virtual TexInfo &	glTexInfo (unsigned tex=0) const

Static Public Attributes
static Tree *	_optionTree

Static Public Attributes inherited from anatomist::ObjectVector
static Tree *	_optionTree

Protected Member Functions
virtual void	unregisterObservable (Observable *)
	Called when an observable is destroyed, only called by Observable: don't use this function directly. More...

Protected Member Functions inherited from anatomist::MObject
virtual void	_insertObject (AObject *o)
	must be called by all subclasses in their insert() implementation More...

virtual void	_eraseObject (AObject *o)
	must be called by all subclasses if they reimplement erase() More...

virtual void	updateSubObjectReferential (const AObject *o)

virtual void	clearReferentialInheritance ()
	sets the object to get referential from to null, unregister it More...

Protected Member Functions inherited from anatomist::AObject
const PrimList &	primitives () const

PrimList &	primitives ()

virtual void	cleanup ()
	must be called by objects destructors - Must be explicitly called by each object destructor since it can call virtual functions More...

AObject *&	_referentialInheritance ()
	provide access to derived classes More...

	AObject (const AObject &)
	copy constructor, protected and used only to reimplement clone() More...

Protected Member Functions inherited from anatomist::Observable
void	clearChanged () const
	Indicates that this object has no longer changed, or that it has already notified all of its observers of its most recent change. More...

void	obsSetChanged (int, bool=true) const
	int-based change flags (use enums to address them) More...

void	obsSetChanged (const std::string &, bool=true) const
	string-based change flags More...

Protected Member Functions inherited from carto::SharedObject
void	disableRefCount ()

Protected Member Functions inherited from carto::WeakObject
	WeakObject ()

	WeakObject (const WeakObject &)

WeakObject &	operator= (const WeakObject &)

Protected Member Functions inherited from anatomist::Observer
virtual void	cleanupObserver ()
	call this function from inherited classes destructors. More...

virtual void	registerObservable (Observable *)
	only called by Observable: don't use this function directly More...

const std::set< Observable * > &	observed () const

Protected Member Functions inherited from anatomist::GLComponent
void	glAddTextures (unsigned ntex=1)

Protected Attributes
bool	_dynamic

Protected Attributes inherited from anatomist::ObjectVector
datatype	_data

Protected Attributes inherited from anatomist::MObject
bool	_contentHasChanged

Protected Attributes inherited from anatomist::AObject
int	_type
	Should be static in each object class. More...

int	_id

std::string	_name

std::string	_filename

std::set< AWindow * >	_winList

int	_inMemory

int	_visible

ParentList	_parents

Material	_material
	Should be a pointer: some objects don't have a material (2D objects) More...

Referential *	_referential
	Referentiel. More...

bool	_referenceHasChanged
	Reference has-changed flag. More...

AObjectPalette *	_palette
	Palette. More...

Additional Inherited Members
Public Types inherited from anatomist::MObject
typedef AIterator	iterator

typedef AIterator	const_iterator

Public Types inherited from anatomist::AObject
enum	ObjectType { VOLUME , BUCKET , FACET , TRIANG , LIST , VECTOR , MAP , SET , GRAPH , GRAPHOBJECT , VOLSURF , MULTISURF , MULTIBUCKET , MULTIVOLUME , FUSION2D , FUSION3D , FASCICLE , FASCICLEGRAPH , TEXTURE , TEXSURFACE , FUSION2DMESH , VECTORFIELD , OTHER }
	Base object type identifiers. More...

typedef std::set< MObject * >	ParentList
	Storage type for parent objects (multi-objects containing this one) More...

typedef ObjectMenu (	ObjectMenuRegistrerFunction) (const AObject objtype, ObjectMenu menu)
	dynamic menu registration function More...

Public Types inherited from carto::RCObject
typedef int	RefCounterType

Public Types inherited from anatomist::GLComponent
enum	glTextureMode { glGEOMETRIC , glLINEAR , glREPLACE , glDECAL , glBLEND , glADD , glCOMBINE , glLINEAR_A_IF_A , glLINEAR_ON_DEFINED , glLINEAR_A_IF_B = glLINEAR_ON_DEFINED , glLINEAR_A_IF_NOT_A , glLINEAR_A_IF_NOT_B , glLINEAR_B_IF_A , glLINEAR_B_IF_B , glLINEAR_B_IF_NOT_A , glLINEAR_B_IF_NOT_B , glLINEAR_A_IF_A_ALPHA , glLINEAR_A_IF_NOT_B_ALPHA , glLINEAR_B_IF_B_ALPHA , glLINEAR_B_IF_NOT_A_ALPHA , glMAX_CHANNEL , glMIN_CHANNEL , glMAX_ALPHA , glMIN_ALPHA , glGEOMETRIC_SQRT , glGEOMETRIC_LIGHTEN }

enum	glTextureFiltering { glFILT_NEAREST , glFILT_LINEAR }

enum	glPart { glGENERAL , glBODY , glMATERIAL , glGEOMETRY , glPALETTE , glREFERENTIAL , glTEXIMAGE , glTEXENV , glNOPART , glTEXIMAGE_NUM , glTEXENV_NUM }
	GL object parts, each driving a GL list. More...

enum	glAutoTexturingMode { glTEX_MANUAL , glTEX_OBJECT_LINEAR , glTEX_EYE_LINEAR , glTEX_SPHERE_MAP , glTEX_REFLECTION_MAP , glTEX_NORMAL_MAP }

typedef ViewState::glSelectRenderMode	glSelectRenderMode

Static Public Member Functions inherited from anatomist::AObject
static std::list< AObject * >	load (const std::string &filename)
	Static object loader: creates an objects, loads its contents. More...

static bool	reload (AObject *object, bool onlyoutdated=false)
	Reads from disk again. More...

static int	registerObjectType (const std::string &id)
	Creates a new object type number and returns it. More...

static std::string	objectTypeName (int type)

static void	setObjectMenu (std::string type, carto::rc_ptr< ObjectMenu > om)

static carto::rc_ptr< ObjectMenu >	getObjectMenu (std::string type)

static std::map< std::string, carto::rc_ptr< ObjectMenu > > &	getObjectMenuMap ()

static void	addObjectMenuRegistration (ObjectMenuRegistrerFunction)

static void	addObjectMenuRegistration (ObjectMenuRegistrerClass *)

static void	cleanStatic ()
	cleanup static global variables (called when quitting anatomist) More...

Static Public Member Functions inherited from anatomist::GLComponent
static unsigned long	glGlobalMaxNumDisplayedPolygons ()

static void	glSetGlobalMaxNumDisplayedPolygons (unsigned long n)

static GLPrimitives	glHandleTransformation (const ViewState &vs, const Referential *myref)
	helper function used in AObject::render() More...

static GLPrimitives	glPopTransformation (const ViewState &vs, const Referential *myref)
	called after glHandleTransformation() and glMainGLL() to pop the transformation matrix More...

Protected Types inherited from anatomist::ObjectVector
typedef std::list< carto::shared_ptr< AObject > >	datatype

Static Protected Attributes inherited from anatomist::AObject
static std::map< std::string, int >	_objectTypes
	name-to-type map More...

static std::map< int, std::string >	_objectTypeNames
	type-to-name map More...

static std::map< std::string, carto::rc_ptr< ObjectMenu > >	_objectmenu_map
	Object Menu Map. More...

Detailed Description

Anatomist object which contains two volumes: one for the MRI anatomic image, and another for the functional data (fMRI, PET...)

Definition at line 53 of file Fusion2D.h.

Constructor & Destructor Documentation

◆ Fusion2D()

anatomist::Fusion2D::Fusion2D	(	const std::vector< AObject * > &	obj,
		bool	dynamic = `false`
	)

The dynamic parameter has been added in Anatomist 4.6.1 and is false by default.

If true, children objects can be destroyed, except the last one.

◆ ~Fusion2D()

virtual anatomist::Fusion2D::~Fusion2D ( )

virtual

Member Function Documentation

◆ CanRemove()

bool anatomist::Fusion2D::CanRemove ( AObject * obj )

inlinevirtual

Reimplemented from anatomist::ObjectVector.

Definition at line 137 of file Fusion2D.h.

References _dynamic, and anatomist::ObjectVector::size().

◆ dimTexture()

virtual unsigned anatomist::Fusion2D::dimTexture ( ) const

inlinevirtual

Number of texture values for a point.

Reimplemented from anatomist::AObject.

Definition at line 113 of file Fusion2D.h.

◆ fallbackReferentialInheritance()

virtual AObject* anatomist::Fusion2D::fallbackReferentialInheritance ( ) const

virtual

object to take referential from when no ref is assigned

Reimplemented from anatomist::AObject.

◆ getReferential()

const Referential* anatomist::Fusion2D::getReferential ( ) const

virtual

Implements anatomist::Sliceable.

◆ glAllowedTexModes()

std::set<glTextureMode> anatomist::Fusion2D::glAllowedTexModes ( unsigned tex = 0 ) const

virtual

List of actually allowed texturing modes for this particular object.

Reimplemented from anatomist::GLComponent.

◆ glAPI() [1/2]

virtual GLComponent* anatomist::Fusion2D::glAPI ( )

inlinevirtual

Reimplemented from anatomist::GLComponent.

Definition at line 64 of file Fusion2D.h.

◆ glAPI() [2/2]

virtual const GLComponent* anatomist::Fusion2D::glAPI ( ) const

inlinevirtual

Reimplemented from anatomist::GLComponent.

Definition at line 63 of file Fusion2D.h.

◆ glClearHasChangedFlags()

virtual void anatomist::Fusion2D::glClearHasChangedFlags ( ) const

virtual

Reimplemented from anatomist::GLComponent.

◆ glMaterial()

virtual const Material* anatomist::Fusion2D::glMaterial ( ) const

virtual

Reimplemented from anatomist::GLComponent.

◆ glMax2D()

virtual std::vector<float> anatomist::Fusion2D::glMax2D ( ) const

virtual

Implements anatomist::Sliceable.

◆ glMin2D()

virtual std::vector<float> anatomist::Fusion2D::glMin2D ( ) const

virtual

Implements anatomist::Sliceable.

◆ glNumTextures()

unsigned anatomist::Fusion2D::glNumTextures ( const ViewState & ) const

virtual

Reimplemented from anatomist::GLComponent.

◆ glPalette()

virtual const AObjectPalette* anatomist::Fusion2D::glPalette ( unsigned tex = 0 ) const

virtual

Reimplemented from anatomist::GLComponent.

◆ glSetChanged()

virtual void anatomist::Fusion2D::glSetChanged	(	glPart	,
		bool	= `true`
	)		const

virtual

Reimplemented from anatomist::GLComponent.

◆ glSetTexEnvChanged()

virtual void anatomist::Fusion2D::glSetTexEnvChanged	(	bool	x = `true`,
		unsigned	tex = `0`
	)		const

virtual

Reimplemented from anatomist::GLComponent.

◆ glSetTexImageChanged()

virtual void anatomist::Fusion2D::glSetTexImageChanged	(	bool	x = `true`,
		unsigned	tex = `0`
	)		const

virtual

Reimplemented from anatomist::GLComponent.

◆ glSetTexMode()

virtual void anatomist::Fusion2D::glSetTexMode	(	glTextureMode	mode,
		unsigned	tex = `0`
	)

virtual

Reimplemented from anatomist::GLComponent.

◆ glVoxelSize()

virtual std::vector<float> anatomist::Fusion2D::glVoxelSize ( ) const

virtual

Reimplemented from anatomist::Sliceable.

◆ hasTexture()

virtual bool anatomist::Fusion2D::hasTexture ( ) const

inlinevirtual

Textured objects have values associated with a geometric coordinate.

Reimplemented from anatomist::AObject.

Definition at line 112 of file Fusion2D.h.

◆ Is2DObject()

virtual bool anatomist::Fusion2D::Is2DObject ( )

inlinevirtual

Can be displayed in 2D windows.

Reimplemented from anatomist::MObject.

Definition at line 84 of file Fusion2D.h.

◆ Is3DObject()

virtual bool anatomist::Fusion2D::Is3DObject ( )

inlinevirtual

Can't be displayed in 3D windows.

Reimplemented from anatomist::MObject.

Definition at line 86 of file Fusion2D.h.

◆ isDynamic()

bool anatomist::Fusion2D::isDynamic ( ) const

inline

Definition at line 124 of file Fusion2D.h.

References _dynamic.

◆ isTransparent()

virtual bool anatomist::Fusion2D::isTransparent ( ) const

virtual

Reimplemented from anatomist::MObject.

◆ mixedTexValue() [1/2]

virtual float anatomist::Fusion2D::mixedTexValue ( const std::vector< float > & pos ) const

virtual

Same as above except that coordinates are not transformed but taken in object coordinates system.

Reimplemented from anatomist::AObject.

◆ mixedTexValue() [2/2]

virtual float anatomist::Fusion2D::mixedTexValue	(	const std::vector< float > &	pos,
		const Referential *	orgRef
	)		const

virtual

Gets a "mixed" texture value at a given space / time location.

The value is mixed, for multi-dimensional textures, according to an internal method (each object can use its own). Space coordinates are transformed from the incoming referential to the object's one.

Note: in Anatomist 4.4 and earlier, this method was taking an additional argument, org_voxel_size. This was kind of pointless since it more or less supposed that coordinates were passed in voxels rather in mm, which is wrong. In Anatomist 4.5 coords are officially always in mm.

Reimplemented from anatomist::AObject.

◆ mixedValue()

virtual float anatomist::Fusion2D::mixedValue ( const std::vector< float > & pv ) const

virtual

◆ moveVolume() [1/2]

void anatomist::Fusion2D::moveVolume	(	AObject *	vol,
		int	dstpos
	)

move the sub-object vol to position dstpos.

If dstpos < 0, the object is moved to the end of the list

◆ moveVolume() [2/2]

void anatomist::Fusion2D::moveVolume	(	int	srcpos,
		int	dstpos
	)

move the sub-object at position srcpos to position dstpos.

If dstpos < 0, the object is moved to the end of the list

◆ mri()

AObject* anatomist::Fusion2D::mri ( ) const

inline

Definition at line 68 of file Fusion2D.h.

References anatomist::ObjectVector::_data, and anatomist::ObjectVector::size().

◆ MType()

virtual int anatomist::Fusion2D::MType ( ) const

inlinevirtual

Precise type of multi-object.

Reimplemented from anatomist::ObjectVector.

Definition at line 70 of file Fusion2D.h.

References anatomist::AObject::FUSION2D.

◆ optionTree()

virtual Tree* anatomist::Fusion2D::optionTree ( ) const

virtual

Menu tree for new options, see object/optionMatcher.h.

Reimplemented from anatomist::ObjectVector.

◆ render()

virtual bool anatomist::Fusion2D::render	(	PrimList &	,
		const ViewState &
	)

virtual

rendering (generally 2D or 3D using OpenGL).

Calls GLComponent API ig glAPI() is not null, otherwise nothing is done and this method should be overloaded.

Reimplemented from anatomist::MObject.

◆ reorder()

void anatomist::Fusion2D::reorder ( const std::vector< AObject * > & )

Reorder sub-objects.

◆ setDynamic()

void anatomist::Fusion2D::setDynamic ( bool dynamic )

inline

Definition at line 125 of file Fusion2D.h.

References _dynamic.

◆ sliceableAPI() [1/2]

virtual Sliceable* anatomist::Fusion2D::sliceableAPI ( )

inlinevirtual

Reimplemented from anatomist::Sliceable.

Definition at line 66 of file Fusion2D.h.

◆ sliceableAPI() [2/2]

virtual const Sliceable* anatomist::Fusion2D::sliceableAPI ( ) const

inlinevirtual

Reimplemented from anatomist::Sliceable.

Definition at line 65 of file Fusion2D.h.

◆ textured2D()

virtual bool anatomist::Fusion2D::textured2D ( ) const

inlinevirtual

true if 2D rendering uses a textured plane (not a full openGL object)

Reimplemented from anatomist::AObject.

Definition at line 87 of file Fusion2D.h.

◆ texValues() [1/2]

virtual std::vector<float> anatomist::Fusion2D::texValues ( const std::vector< float > & pos ) const

virtual

Reimplemented from anatomist::AObject.

◆ texValues() [2/2]

virtual std::vector<float> anatomist::Fusion2D::texValues	(	const std::vector< float > &	pos,
		const Referential *	orgRef
	)		const

virtual

Gets the array of texture values at a given location.

Note: in Anatomist 4.4 and earlier, this method was taking an additional argument, org_voxel_size. This was kind of pointless since it more or less supposed that coordinates were passed in voxels rather in mm, which is wrong. In Anatomist 4.5 coords are officially always in mm.

Reimplemented from anatomist::AObject.

◆ unregisterObservable()

virtual void anatomist::Fusion2D::unregisterObservable ( Observable * )

protectedvirtual

Called when an observable is destroyed, only called by Observable: don't use this function directly.

Reimplemented from anatomist::AObject.

◆ update()

virtual void anatomist::Fusion2D::update	(	const Observable *	observable,
		void *	arg
	)

virtual

This class is an Observer of each of the AObject it groups.

Reimplemented from anatomist::MObject.

◆ update2DTexture()

virtual bool anatomist::Fusion2D::update2DTexture	(	AImage &	,
		const Point3df &	posbase,
		const SliceViewState &	,
		unsigned	tex = `0`
	)		const

virtual

this function must be overloaded to actually fill the slice image

Reimplemented from anatomist::Sliceable.

◆ voxelSize()

virtual std::vector<float> anatomist::Fusion2D::voxelSize ( ) const

virtual

Returns at least 4 sizes. For 3D objects, returns (1, 1, 1, 1)

Reimplemented from anatomist::MObject.

Member Data Documentation

◆ _dynamic

bool anatomist::Fusion2D::_dynamic

protected

Definition at line 133 of file Fusion2D.h.

Referenced by CanRemove(), isDynamic(), and setDynamic().

◆ _optionTree

Tree* anatomist::Fusion2D::_optionTree

static

Definition at line 128 of file Fusion2D.h.

The documentation for this class was generated from the following file:

anatomist/mobject/Fusion2D.h

Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Fusion2D()

◆ ~Fusion2D()

Member Function Documentation

◆ CanRemove()

◆ dimTexture()

◆ fallbackReferentialInheritance()

◆ getReferential()

◆ glAllowedTexModes()

◆ glAPI() [1/2]

◆ glAPI() [2/2]

◆ glClearHasChangedFlags()

◆ glMaterial()

◆ glMax2D()

◆ glMin2D()

◆ glNumTextures()

◆ glPalette()

◆ glSetChanged()

◆ glSetTexEnvChanged()

◆ glSetTexImageChanged()

◆ glSetTexMode()

◆ glVoxelSize()

◆ hasTexture()

◆ Is2DObject()

◆ Is3DObject()

◆ isDynamic()

◆ isTransparent()

◆ mixedTexValue() [1/2]

◆ mixedTexValue() [2/2]

◆ mixedValue()

◆ moveVolume() [1/2]

◆ moveVolume() [2/2]

◆ mri()

◆ MType()

◆ optionTree()

◆ render()

◆ reorder()

◆ setDynamic()

◆ sliceableAPI() [1/2]

◆ sliceableAPI() [2/2]

◆ textured2D()

◆ texValues() [1/2]

◆ texValues() [2/2]

◆ unregisterObservable()

◆ update()

◆ update2DTexture()

◆ voxelSize()

Member Data Documentation

◆ _dynamic

◆ _optionTree