anatomist  5.1.2
3D neuroimaging data viewer
aims Namespace Reference

Namespaces

 DataManip
 
 detail
 
 gui
 
 internal
 
 QSqlGraphDatabase
 
 RoiDiff
 
 SparseOrDenseMatrix
 
 SparseVolume
 
 strel
 
 SurfaceGenerator
 

Classes

class  BorderIterator
 
class  AimsGraphReader
 
class  AimsGraphWriter
 
class  BucketMapGenerator
 
class  PolylinePolynomialInterpolator
 
class  FinderQSqlGraphFormat
 
class  FinderQtFormats
 
class  QSqlGraphDatabase
 
class  QSqlGraphFormat
 
class  QSqlGraphFormatHeader
 
class  QSqlGraphHelper
 
class  QSqlGraphPlugin
 
class  QtFormats
 
class  QtFormatsHeader
 
class  QtFormatsPlugin
 
class  QtFormatsReader
 
class  QtFormatsWriter
 
class  _convertedNiftiArrayValue
 
class  _convertedNiftiArrayValue< AimsVector< U, D > >
 
class  _convertedNiftiValue
 
class  _convertedNiftiValue< AimsVector< U, D > >
 
class  AffineTransformation3d
 
class  AimsApplication
 
class  AimsFastAllocationData
 
struct  AimsGraphWriter_Private
 
class  AimsRoi
 
class  AnyTypeReader
 
class  AnyTypeReaderProcess
 
class  APCReader
 
class  ArgFormat
 
class  ArgHeader
 
class  ArgReader
 
class  ArgWriter
 
class  BckFormat
 
class  BckHeader
 
class  BckMapFormat
 
class  BckMapReader
 
class  BckMapWriter
 
class  BckReader
 
class  BckWriter
 
class  BorderFiller
 
class  BoundingBox
 
class  BucketMap
 
class  BucketUtil
 
class  Bundle
 
class  BundleFormatReader
 
class  BundleInfo
 
class  BundleListener
 
class  BundleMotion
 
class  BundleProducer
 
class  BundleReader
 
class  BundleRegroup
 
class  BundleROISelect
 
class  BundleROISplit
 
class  Bundles
 
class  BundleSampler
 
class  BundlesFeatures
 
class  BundlesFusion
 
class  BundleSlicesToMesh
 
class  BundlesSlicer
 
class  BundlesSlicerListener
 
class  BundleToGraph
 
class  BundleToGraphWriter
 
class  BundleWriter
 
class  ChannelReader
 
class  CiftiTools
 
class  Clock
 
class  CoarseReader
 
class  ColorMap
 
class  ConnectedComponentEngine
 
class  ConnectedComponentEngine< carto::VolumeRef< T >, carto::VolumeRef< O > >
 
class  Connectivity
 
class  ConnectomistBundlesReader
 
class  const_cyclic_iterator
 
struct  CoordinatesLess
 
struct  CoordinatesLess< T, 3 >
 
class  CurveOrientation
 
class  CurveSelection
 
class  CutMesh
 
class  CutTexturedMesh
 
class  cyclic_iterator
 
class  DecomposedAffineTransformation3d
 
class  DefaultAsciiItemReader
 
class  DefaultAsciiItemReader< AimsBucketItem< T > >
 
class  DefaultAsciiItemReader< DtiTensor >
 
class  DefaultAsciiItemReader< SparseMatrix >
 
class  DefaultAsciiItemReader< std::list< T > >
 
class  DefaultAsciiItemReader< std::vector< T > >
 
class  DefaultAsciiItemReader< Tensor >
 
class  DefaultAsciiItemReader< Trieder >
 
class  DefaultAsciiItemWriter
 
class  DefaultAsciiItemWriter< AimsBucketItem< T > >
 
class  DefaultAsciiItemWriter< DtiTensor >
 
class  DefaultAsciiItemWriter< SparseMatrix >
 
class  DefaultAsciiItemWriter< std::list< T > >
 
class  DefaultAsciiItemWriter< std::vector< T > >
 
class  DefaultAsciiItemWriter< Tensor >
 
class  DefaultAsciiItemWriter< Trieder >
 
class  DefaultBSwapItemReader
 
class  DefaultBSwapItemReader< AimsBucketItem< T > >
 
class  DefaultBSwapItemReader< AimsVector< T, D > >
 
class  DefaultBSwapItemReader< DtiTensor >
 
class  DefaultBSwapItemReader< SparseMatrix >
 
class  DefaultBSwapItemReader< std::list< T > >
 
class  DefaultBSwapItemReader< std::vector< T > >
 
class  DefaultBSwapItemReader< Tensor >
 
class  DefaultBSwapItemReader< Trieder >
 
class  DefaultBSwapItemWriter
 
class  DefaultBSwapItemWriter< AimsBucketItem< T > >
 
class  DefaultBSwapItemWriter< AimsVector< T, D > >
 
class  DefaultBSwapItemWriter< DtiTensor >
 
class  DefaultBSwapItemWriter< SparseMatrix >
 
class  DefaultBSwapItemWriter< std::list< T > >
 
class  DefaultBSwapItemWriter< std::vector< T > >
 
class  DefaultBSwapItemWriter< Tensor >
 
class  DefaultBSwapItemWriter< Trieder >
 
class  DefaultItemReader
 
class  DefaultItemReader< AimsBucketItem< T > >
 
class  DefaultItemReader< AimsVector< T, D > >
 
class  DefaultItemReader< DtiTensor >
 
class  DefaultItemReader< SparseMatrix >
 
class  DefaultItemReader< std::list< T > >
 
class  DefaultItemReader< std::vector< T > >
 
class  DefaultItemReader< Tensor >
 
class  DefaultItemReader< Trieder >
 
class  DefaultItemWriter
 
class  DefaultItemWriter< AimsBucketItem< T > >
 
class  DefaultItemWriter< AimsVector< T, D > >
 
class  DefaultItemWriter< DtiTensor >
 
class  DefaultItemWriter< SparseMatrix >
 
class  DefaultItemWriter< std::list< T > >
 
class  DefaultItemWriter< std::vector< T > >
 
class  DefaultItemWriter< Tensor >
 
class  DefaultItemWriter< Trieder >
 
class  EcatFormat
 
class  EcatHeader
 
class  EcatPlugin
 
class  EcatReader
 
class  EcatSinoHeader
 
class  EcatSinoReader
 
class  EcatSinoWriter
 
class  EcatWriter
 
class  FdfFormat
 
class  FdfHeader
 
class  FdfParType
 
class  FdfPlugin
 
class  FdfProcPar
 
class  FdfReader
 
class  FiberInfo
 
class  FiberOversampler
 
class  FileFormat
 
class  FileFormatDictionary
 
class  Finder
 
class  FinderBckFormat
 
class  FinderEcatFormat
 
class  FinderFdfFormat
 
class  FinderFormat
 
class  FinderGenesisFormat
 
class  FinderGiftiFormat
 
class  FinderGraphFormat
 
class  FinderHieFormat
 
class  FinderImasFormat
 
class  FinderJpegFormat
 
class  FinderMeshFormat
 
class  FinderMniObjFormat
 
class  FinderPlyFormat
 
class  FinderSpmFormat
 
class  FinderTexFormat
 
class  FinderTiffFormat
 
class  FinderTriFormat
 
class  FinderTrmFormat
 
class  FinderVidaFormat
 
class  FinderWavefrontFormat
 
class  GenericWriter
 
class  GenesisFormat
 
class  GenesisHeader
 
class  GenesisReader
 
class  GiftiHeader
 
class  GiftiMeshFormat
 
class  GiftiPlugin
 
class  GiftiTextureFormat
 
class  GraphBundlesFormat
 
struct  GraphElementCode
 
class  GraphManip
 
class  GraphVolumeFormat
 
class  Header
 
class  HieFormat
 
class  Hierarchy
 
class  HierarchyReader
 
class  ImasFormat
 
class  ImasHeader
 
class  ImasSorDFormat
 
class  ImasVolFormat
 
class  IntegrableOf
 
class  IntegratorOf
 
class  Interpolator
 
class  IOObjectTypesDictionary
 
class  IOOptions
 
class  ItemReader
 
class  ItemWriter
 
class  JpegFormat
 
class  JpegHeader
 
class  JpegPlugin
 
class  JpegReader
 
class  JpegWriter
 
class  LabelNodeFilter
 
class  LabelReader
 
class  LinearInterpolator
 
class  LowLevelArgReader
 
class  LowLevelArgWriter
 
class  LowLevelRoiReader
 
class  LowLevelStandardArgReader
 
class  LowLevelStandardArgWriter
 
class  MaskIterator
 
class  MaskIteratorOf
 
class  MaskIteratorOf< carto::VolumeRef< T > >
 
class  MaskIteratorOf< Graph >
 
class  MathUtil
 
class  MeshFormat
 
class  MeshHeader
 
class  MeshProjection
 
class  MeshProjectionFactory
 
class  MeshReader
 
class  MeshWriter
 
class  MinfFormat
 
class  MniObjFormat
 
class  MniObjHeader
 
class  MotionedMaskIterator
 
class  MotionedRoiIterator
 
class  MotionedVolumeROILabelMap
 
class  MotionWriter
 
class  MRTrixBundleReader
 
class  NameNodeFilter
 
class  NodeFilter
 
class  Path
 
class  PlyFormat
 
class  PlyHeader
 
class  PlyPlugin
 
class  PlyReader
 
class  PlyWriter
 
class  PointSetFeatures
 
class  PointsInImageFeatures
 
class  Polyline
 
class  PovFormat
 
class  PovWriter
 
class  Process
 
struct  ProcessInput
 
class  ProgressInfo
 
class  PythonHeader
 
class  Quaternion
 
class  Reader
 
class  ReaderAsObject
 
class  RoiDiff
 
class  RoiFeatures
 
class  RoiIterator
 
class  RoiIteratorOf
 
class  RoiIteratorOf< carto::VolumeRef< T > >
 
class  RoiIteratorOf< Graph >
 
class  ROILabelMap
 
class  RombergIntegratorOf
 
class  ScalarFeaturesProvider
 
class  ScalarSetFeatures
 
class  ScaledEncoding
 
class  ScannerConf
 
class  Selection
 
class  SelectionExpander
 
class  SelectionReader
 
class  SelectionSet
 
class  SelectionWriter
 
class  Selector
 
class  Settings
 
class  SimpleBundlesSlicer
 
class  SimpleVoxelSampler
 
class  Sinogram
 
class  SliceFormatHeader
 
class  SomaIOAimsDataFormat
 
class  SparseMatrix
 
class  SparseMatrixUtil
 
class  SparseOrDenseMatrix
 
class  SparseVolume
 
class  SparseVolume< BucketMap< T > >
 
class  SparseVolume< BucketMap< Void > >
 
class  SparseVolume< carto::Volume< T > >
 
struct  specifiedLabels
 
class  SpmFormat
 
class  SpmHeader
 
class  SpmReader
 
class  SpmWriter
 
class  StandardReferentials
 
class  StructuredConstVolume
 
class  StructuredVolume
 
class  StructuringElement
 
class  StructuringElementRef
 
class  StxFormat
 
class  SurfaceGenerator
 
class  SurfaceManip
 
class  Tex2Graph
 
class  TexFormat
 
class  TexHeader
 
class  TexReader
 
class  TexWriter
 
class  TiffFormat
 
class  TiffHeader
 
class  TiffPlugin
 
class  TiffReader
 
class  TiffWriter
 
class  TrackvisBundleReader
 
class  TransformationChain3d
 
class  TransformationGraph3d
 
class  TrapezeIntegratorOf
 
class  TriFormat
 
class  TriHeader
 
class  TriReader
 
class  TriWriter
 
class  TrmHeader
 
class  VidaFormat
 
class  VidaHeader
 
class  VidaPlugin
 
class  VidaReader
 
class  VidaWriter
 
class  VolumeFormat
 
class  VolumeRefFormat
 
class  VolumeROILabelMap
 
class  VoxelSampler
 
class  Vrml1Format
 
class  WavefrontHeader
 
class  WavefrontMeshFormat
 
class  WavefrontMeshReader
 
class  WavefrontMeshWriter
 
class  WavefrontMeshWriter< D, Void >
 
class  Writer
 

Typedefs

typedef CoordinatesLess< Point3d, 3 > BucketMapLess
 
typedef carto::rc_ptr< BundleRBundle
 
typedef carto::rc_ptr< BundleListenerRBundleListener
 
typedef carto::rc_ptr< BundleProducerRBundleProducer
 
typedef aims::Polyline::Point_t FiberPoint
 
typedef std::vector< aims::FiberPointFiber
 
typedef std::vector< FiberFibers
 
typedef std::vector< FibersBundlesSet
 
typedef std::map< std::string, std::map< std::string, GraphElementCode > > GraphElementTable
 
typedef IntegrableOf< float > Integrable
 
typedef IntegratorOf< float > Integrator
 
typedef RombergIntegratorOf< float > RombergIntegrator
 
typedef TrapezeIntegratorOf< float > TrapezeIntegrator
 
typedef carto::AllocatorContext Allocator
 
typedef boost::numeric::ublas::sparse_matrix< double > boost_sparse_matrix
 
typedef boost::numeric::ublas::sparse_vector< double > boost_sparse_vector
 
typedef ProgressInfo< double, double > Progression
 

Functions

QtFormatsReader< T > & operator>> (QtFormatsReader< T > &reader, AimsData< T > &thing)
 
QtFormatsWriter< T > & operator<< (QtFormatsWriter< T > &writer, const AimsData< T > &thing)
 
bool initQtPlugins ()
 
QCoreApplication * initializeQApplication (int argc, char **argv, bool use_gui=true)
 
bool qtResolveSymlinks ()
 
void setQtResolveSymlinks (bool)
 
void AimsConnectedComponent (carto::VolumeRef< T > data, aims::Connectivity::Type connectivity, std::map< T, size_t > &valids, const T &backgrnd=0, bool bin=true, size_t minSize=0, size_t maxSize=0, size_t numMax=0, bool verbose=true)
 
void AimsConnectedComponent (carto::VolumeRef< T > data, aims::Connectivity::Type connectivity, const T &backgrnd=0, bool bin=true, size_t minSize=0, size_t maxSize=0, size_t numMax=0, bool verbose=true)
 
void AimsConnectedComponent (BucketMap< T > &data, aims::Connectivity::Type connectivity, const T &backgrnd=0, bool bin=true, size_t minSize=0, size_t maxSize=0, size_t numMax=0, bool verbose=true)
 
void AimsConnectedComponent (AimsBucket< Void > &component, const carto::VolumeRef< T > &data, aims::Connectivity::Type connectivity, const T &backgrnd=0, bool bin=true, size_t minsize=0, size_t maxSize=0, size_t maxcomp=0, bool verbose=true)
 
void AimsConnectedComponent (AimsBucket< Void > &component, const BucketMap< T > &data, Connectivity::Type connectivity, const T &backgrnd=0, bool bin=true, size_t minsize=0, size_t maxSize=0, size_t maxcomp=0, bool verbose=true)
 
carto::VolumeRef< int16_t > AimsLabeledConnectedComponent (AimsBucket< Void > &component, const carto::VolumeRef< T > &data, aims::Connectivity::Type connectivity, const T &backgrnd=0, bool bin=true, size_t minsize=0, size_t maxSize=0, size_t maxcomp=0, bool verbose=true)
 
AimsData< T > transpose (const AimsData< T > &thing)
 
void incSorting (AimsData< T > &thing)
 
void decSorting (AimsData< T > &thing)
 
AimsData< int32_t > incOrder (const AimsData< T > &thing)
 
AimsData< int32_t > decOrder (const AimsData< T > &thing)
 
bool hasSameDim (const AimsData< T > &v1, const AimsData< T > &v2)
 
bool hasSameSize (const AimsData< T > &v1, const AimsData< T > &v2)
 
AimsData< T > triInf (const AimsData< T > &thing)
 
AimsData< T > triSup (const AimsData< T > &thing)
 
std::string aimsVersion ()
 
AIMSDATA_APIbyteswap (const T &x)
 
AIMSDATA_APIbyteswap16 (const T &x)
 
AIMSDATA_APIbyteswap32 (const T &x)
 
AIMSDATA_APIbyteswap64 (const T &x)
 
AIMSDATA_API short byteswap (const short &x)
 
AIMSDATA_API unsigned short byteswap (const unsigned short &x)
 
AIMSDATA_API int byteswap (const int &x)
 
AIMSDATA_API unsigned int byteswap (unsigned int x)
 
AIMSDATA_API float byteswap (const float &x)
 
GenesisReader< T > & operator>> (GenesisReader< T > &reader, AimsData< T > &thing)
 
AIMSDATA_API HierarchyReaderoperator>> (HierarchyReader &, Tree &)
 
HierarchyReaderoperator>> (HierarchyReader &reader, Hierarchy &thing)
 
MotionWriteroperator<< (MotionWriter &writer, const AffineTransformation3d &thing) __attribute__((__deprecated__("OBSOLETE")))
 
AIMSDATA_API PovWriter< D, T > & operator<< (PovWriter< D, T > &writer, const AimsTimeSurface< D, T > &thing)
 
bool canEncodeAsScaledS16 (const carto::Volume< T > &vol, float &slope, float &offset, bool enableoffset=true, double *maxerr=0)
 
bool canEncodeAsScaledS16 (const carto::Volume< float > &vol, float &slope, float &offset, bool enableoffset, double *)
 
bool canEncodeAsScaledS16 (const carto::Volume< double > &vol, float &slope, float &offset, bool enableoffset, double *)
 
SpmReader< T > & operator>> (SpmReader< T > &reader, AimsData< T > &thing)
 
SpmWriter< T > & operator<< (SpmWriter< T > &writer, const AimsData< T > &thing)
 
void spmAttributesConverter (carto::Object header)
 
void spmAttributesConverter (carto::GenericObject &header)
 
aims::GenericWriteroperator<< (aims::GenericWriter &writer, const T &thing)
 
aims::Writer< T > & operator<< (aims::Writer< T > &writer, const T &thing)
 
bool write (const T &obj, const std::string &filename, carto::Object options=carto::none(), const std::string *format=0)
 
AIMSDATA_API MeshReader< D, T > & operator>> (MeshReader< D, T > &reader, AimsTimeSurface< D, T > &thing)
 
AIMSDATA_API MeshWriter< D, T > & operator<< (MeshWriter< D, T > &writer, const AimsTimeSurface< D, T > &thing)
 
TriReaderoperator>> (TriReader &reader, AimsSurfaceTriangle &thing)
 
TriWriteroperator<< (TriWriter &writer, AimsSurfaceTriangle &thing)
 
AIMSDATA_API TexReader< T > & operator>> (TexReader< T > &r, TimeTexture< T > &thing)
 
AIMSDATA_API ItemWriter< T > & operator>> (ItemWriter< T > &w, TimeTexture< T > &thing)
 
WavefrontMeshWriter< D, T > & operator<< (WavefrontMeshWriter< D, T > &writer, const AimsTimeSurface< D, T > &thing)
 
WavefrontMeshReader< D, T > & operator>> (WavefrontMeshReader< D, T > &reader, AimsTimeSurface< D, T > &thing)
 
int textureMax (const TimeTexture< short > &intex)
 
int textureMin (const TimeTexture< short > &intex)
 
std::map< short, size_t > * labelsHistogram (const TimeTexture< short > &intex, int maxlabel=32767, int minlabel=-32768, bool verbose=false)
 
carto::VolumeRef< AimsRGBAgiftiColormap (const carto::Object header)
 
carto::VolumeRef< AimsRGBAgiftiColormap (const TimeTexture< T > &texture)
 
BucketMap< Void > * mask (const BucketMap< Void > &src, const BucketMap< Void > &m, bool intersect=true)
 
BucketMap< Void > * maskWithVolume (const BucketMap< Void > &src, const carto::rc_ptr< carto::Volume< T > > m, const T &val=0, bool insideval=false)
 
carto::rc_ptr< InterpolatorgetLinearInterpolator (const std::string &)
 
carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< T > > &)
 
template carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< uint8_t > > &)
 
template carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< int8_t > > &)
 
template carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< uint16_t > > &)
 
template carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< int16_t > > &)
 
template carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< short > > &)
 
template carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< uint32_t > > &)
 
template carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< int32_t > > &)
 
template carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< float > > &)
 
template carto::rc_ptr< InterpolatorgetLinearInterpolator (const carto::rc_ptr< carto::Volume< double > > &)
 
Quaternion operator* (const Quaternion &a, const Quaternion &b)
 
void floodFill (carto::Volume< T > &vol, const Point3d &pos, T value, Connectivity::Type connectivity=Connectivity::CONNECTIVITY_18_XYZ, T tolerence=0, bool verbose=false)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const std::string &fileName)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const std::string &fileName, carto::rc_ptr< VoxelSampler > voxelSampler)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const carto::rc_ptr< carto::Volume< T > > &data)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const carto::VolumeRef< T > &data)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const carto::VolumeRef< T > &data, carto::rc_ptr< VoxelSampler > voxelSampler)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const carto::rc_ptr< carto::Volume< T > > &data, carto::rc_ptr< VoxelSampler > voxelSampler)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const std::string &fileName, const AffineTransformation3d &motion)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const std::string &fileName, carto::rc_ptr< VoxelSampler > voxelSampler, const AffineTransformation3d &motion)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const carto::VolumeRef< T > &data, const AffineTransformation3d &motion)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const carto::rc_ptr< carto::Volume< T > > &data, const AffineTransformation3d &motion)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const carto::VolumeRef< T > &data, carto::rc_ptr< VoxelSampler > voxelSampler, const AffineTransformation3d &motion)
 
carto::rc_ptr< MaskIteratorgetMaskIterator (const carto::rc_ptr< carto::Volume< T > > &data, carto::rc_ptr< VoxelSampler > voxelSampler, const AffineTransformation3d &motion)
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const std::string &fileName, carto::rc_ptr< VoxelSampler > voxelSampler=carto::rc_ptr< VoxelSampler >())
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const carto::VolumeRef< T > &data, carto::rc_ptr< VoxelSampler > voxelSampler=carto::rc_ptr< VoxelSampler >())
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const carto::rc_ptr< carto::Volume< T > > &data, carto::rc_ptr< VoxelSampler > voxelSampler=carto::rc_ptr< VoxelSampler >())
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const Graph &data, carto::rc_ptr< VoxelSampler > voxelSampler=carto::rc_ptr< VoxelSampler >())
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const std::string &fileName, const AffineTransformation3d &)
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const std::string &fileName, carto::rc_ptr< VoxelSampler > voxelSampler, const AffineTransformation3d &)
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const carto::VolumeRef< T > &data, const AffineTransformation3d &motion)
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const carto::rc_ptr< carto::Volume< T > > &data, const AffineTransformation3d &motion)
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const Graph &data, const AffineTransformation3d &motion)
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const carto::VolumeRef< T > &data, carto::rc_ptr< VoxelSampler > voxelSampler, const AffineTransformation3d &motion)
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const carto::rc_ptr< carto::Volume< T > > &data, carto::rc_ptr< VoxelSampler > voxelSampler, const AffineTransformation3d &motion)
 
carto::rc_ptr< RoiIteratorgetRoiIterator (const Graph &data, carto::rc_ptr< VoxelSampler > voxelSampler, const AffineTransformation3d &motion)
 
aims::SparseMatrix operator+ (const aims::SparseMatrix &thing)
 
aims::SparseMatrix operator- (const aims::SparseMatrix &thing)
 
aims::SparseMatrix operator+ (const aims::SparseMatrix &thing1, const aims::SparseMatrix &thing2)
 
aims::SparseMatrix operator- (const aims::SparseMatrix &thing1, const aims::SparseMatrix &thing2)
 
aims::SparseMatrix operator* (const aims::SparseMatrix &thing1, const aims::SparseMatrix &thing2)
 
std::vector< double > operator* (const aims::SparseMatrix &thing1, const std::vector< double > &thing2)
 
aims::SparseMatrix operator* (const aims::SparseMatrix &thing1, const double &thing2)
 
aims::SparseMatrix operator/ (const aims::SparseMatrix &thing1, const double &thing2)
 
aims::SparseOrDenseMatrix operator- (const aims::SparseOrDenseMatrix &thing)
 
aims::SparseOrDenseMatrix operator+ (const aims::SparseOrDenseMatrix &thing1, const aims::SparseOrDenseMatrix &thing2)
 
aims::SparseOrDenseMatrix operator- (const aims::SparseOrDenseMatrix &thing1, const aims::SparseOrDenseMatrix &thing2)
 
aims::SparseOrDenseMatrix operator* (const aims::SparseOrDenseMatrix &thing1, const double &thing2)
 
aims::SparseOrDenseMatrix operator/ (const aims::SparseOrDenseMatrix &thing1, const double &thing2)
 
void transformBoundingBox (const AffineTransformation3d &AffineTransformation3d, const Point3df &pmin1, const Point3df &pmax1, Point3df &pmin2, Point3df &pmax2)
 
AffineTransformation3d operator* (const AffineTransformation3d &affineTransformation3d1, const AffineTransformation3d &affineTransformation3d2)
 
carto::rc_ptr< soma::Transformation3doperator* (const carto::rc_ptr< soma::Transformation3d > &transformation3d1, const carto::rc_ptr< soma::Transformation3d > &transformation3d2)
 
TIterator cyclic_advance (TIterator i, TContainer &c)
 
void minmax (const ObjectType &, ValueType &min, ValueType &max)
 
void minmax (const carto::Volume< ValueType > &volume, ValueType &min, ValueType &max)
 
void minmax (const carto::rc_ptr< carto::Volume< ValueType > > &volume, ValueType &min, ValueType &max)
 
void minmax (const carto::VolumeRef< ValueType > &volume, ValueType &min, ValueType &max)
 
std::ostream & operator<< (std::ostream &out, aims::ProgressInfo< T1, T2 > &progression)
 
void toMap (const Vector &vector, std::map< IndexType, typename Vector::value_type > &map, const typename Vector::value_type &background=Vector::value_type(0))
 
EcatReader< T > & operator>> (EcatReader< T > &reader, AimsData< T > &thing)
 
EcatSinoReader< T > & operator>> (EcatSinoReader< T > &reader, std::vector< Sinogram< T > > &thing)
 
EcatSinoWriter< T > & operator<< (EcatSinoWriter< T > &writer, Sinogram< T > &thing)
 
EcatSinoWriter< T > & operator<< (EcatSinoWriter< T > &writer, const std::vector< Sinogram< T > > &thing)
 
EcatWriteroperator<< (EcatWriter &writer, const AimsData< short > &thing)
 
EcatWriteroperator<< (EcatWriter &writer, const AimsData< float > &thing)
 
VidaReader< T > & operator>> (VidaReader< T > &reader, AimsData< T > &thing)
 
VidaWriteroperator<< (VidaWriter &writer, const AimsData< short > &thing)
 
VidaWriteroperator<< (VidaWriter &writer, const AimsData< float > &thing)
 
PlyReader< D, T > & operator>> (PlyReader< D, T > &reader, AimsTimeSurface< D, T > &thing)
 
PlyWriter< D, T > & operator<< (PlyWriter< D, T > &writer, const AimsTimeSurface< D, T > &thing)
 
AIMSDATA_API FdfReader< T > & operator>> (FdfReader< T > &, AimsData< T > &)
 
JpegReader< T > & operator>> (JpegReader< T > &reader, AimsData< T > &thing)
 
JpegWriter< T > & operator<< (JpegWriter< T > &writer, const AimsData< T > &thing)
 
TiffReader< T > & operator>> (TiffReader< T > &reader, AimsData< T > &thing)
 
TiffWriter< T > & operator<< (TiffWriter< T > &writer, const AimsData< T > &thing)
 
convertedNiftiValue (void *data, int index, int dtype)
 
convertedNiftiArrayValue (void *data, int index, int dtype, size_t size)
 
std::string niftiDataType (int dt)
 
int niftiIntDataType (const std::string &typecode)
 
std::string giftiTextureDataType (int dtype, int &ndim, int *dims, int intent, int &ntime)
 
AIMSDATA_API REAL AimsLagrangeInterpolation (const std::vector< REAL > &xa, const std::vector< REAL > &ya, REAL x, REAL *dy)
 
sqr (const T &x)
 
cub (const T &x)
 
float sgn (const T &x)
 
absdiff (const T &x, const T &y)
 
AimsRGB absdiff (const AimsRGB &x, const AimsRGB &y)
 
AimsRGBA absdiff (const AimsRGBA &x, const AimsRGBA &y)