TextureToBlobs Namespace Reference

Functions
std::set< int >	getFilteringNodes (SubjectData &subject)
std::vector< surf::GreyLevelBlob * >	recoverGreyLevelBlobs (const std::vector< surf::ScaleSpaceBlob *> &ssblobs)
void	getGreyLevelBlobsFromGraph (Graph *graph, SubjectData &subject, std::vector< surf::GreyLevelBlob *> &blobs, bool initNull)
void	getScaleSpaceBlobsFromGraph (Graph *graph, std::vector< surf::ScaleSpaceBlob *> &ssblobs, std::map< std::string, std::map< int, std::set< int > > > &listGLBindices, bool initNull)
void	BlobsFromLabelTexture (std::vector< surf::Blob *> &blobs, SubjectData &subject)
void	BlobsFromLabelTextureGlobalMode (std::vector< surf::Blob *> &blobs, SubjectData &subject)
void	BlobsFromLabelTextureRegionMode (std::vector< surf::Blob *> &blobs, surf::Region &region, SubjectData &regionData)
surf::GreyLevelBlob *	findBlob (const std::vector< surf::GreyLevelBlob *> &blobs, std::string subject_id, int index)
surf::ScaleSpaceBlob *	findBlob (const std::vector< surf::ScaleSpaceBlob *> &ssblobs, std::string subject_id, int index)
int	findBlobIndex (const std::vector< surf::GreyLevelBlob *> &blobs, std::string subject_id, int index)
int	findBlobIndex (const std::vector< surf::ScaleSpaceBlob *> &ssblobs, std::string subject_id, int index)
void	RecoverBlobsFromGraph (Graph *graph, SubjectData &subject, std::vector< surf::ScaleSpaceBlob *> &ssblobs, bool initNull=true)
void	RecoverBlobsFromGLBOnly (Graph *graph, SubjectData &subject, std::vector< surf::ScaleSpaceBlob *> &ssblobs, bool initNull=true, float thresholdOnT=-100.0)
void	AimsGraph (Graph *graph, SubjectData &subject, const std::vector< surf::Blob *> &blobs, int representation_mode=CORTICAL_PATCHES)
void	AimsGraph (Graph *graph, SubjectData &subject, const std::vector< surf::ScaleSpaceBlob *> &ssblobs, int graph_mode=DEFAULT, int representation_mode=NONE)
void	AimsGroupGraph (Graph *graph, std::map< std::string, SubjectData *> data, std::vector< surf::ScaleSpaceBlob *> &ssblobs, std::vector< surf::Clique > &cliques, bool buildAndStoreRelationsMeshes=false)
void	ReadAimsGroupGraph (Graph &graph, std::vector< surf::ScaleSpaceBlob *> &ssblobs, std::vector< surf::Clique > &cliques)
void	DestroyBlobs (std::vector< surf::ScaleSpaceBlob *> &ssblobs)
void	DestroyBlobs (std::vector< surf::Blob *> &blobs)
std::vector< uint >	getClustersListsFromGLB (std::vector< surf::GreyLevelBlob *> &blobs, GroupData &data, float clustering_distance_threshold)
void	buildBlobsFromClustersLists (std::vector< surf::GreyLevelBlob *> &blobs, GroupData &data, std::vector< uint > &clusters, std::vector< surf::ScaleSpaceBlob *> &clusteredSsblobs, float clustering_distance_threshold=-1.0, std::string outputTextFile="/tmp/blobsCountTable.py", bool uniqueGLB=false)
double	getOverlapMeasure (Point2df bbmin1, Point2df bbmax1, Point2df bbmin2, Point2df bbmax2, uint *no_overlap)
bool	isInside2DBox (Point2df p1, Point2df bbmin, Point2df bbmax)
void	PrimalSketchRegionMode (std::vector< surf::ScaleSpaceBlob *> &ssblobs, surf::Region &region, SubjectData &regionData, std::string scaleSpacePath, std::string blobsPath, bool recover=false, float scale_max=-1.0)
void	PrimalSketchGlobalMode (std::vector< surf::ScaleSpaceBlob *> &ssblobs, SubjectData &subject, std::string scaleSpacePath, std::string blobsPath, bool recover=false, float scale_max=-1.0)
void	PrimalSketch (std::vector< surf::ScaleSpaceBlob *> &ssblobs, SubjectData &subject, std::string scaleSpacePath, std::string blobsPath, bool recover=false, float scale_max=-1.0)
void	PrimalSketch (SubjectData &subject, std::vector< surf::ScaleSpaceBlob *> &ssblobs, aims::ScaleSpace< AimsSurface< 3, Void >, Texture< float > > *ss, TimeTexture< float > &blobs_texture, float scale_max=-1.0)
void	GreyLevelBlobsFromTexture (SubjectData &subject, std::vector< surf::ScaleSpaceBlob *> &ssblobs, std::string blobsPath)
void	getBlobsFromPrimalSketch (SubjectData &subject, aims::PrimalSketch< AimsSurface< 3, Void >, Texture< float > > &sketch, std::vector< surf::ScaleSpaceBlob *> &ssblobs)

Function Documentation

AimsGraph() [1/2]

void TextureToBlobs::AimsGraph	(	Graph *	graph,
		SubjectData &	subject,
		const std::vector< surf::Blob *> &	blobs,
		int	representation_mode = CORTICAL_PATCHES
	)

AimsGraph() [2/2]

void TextureToBlobs::AimsGraph	(	Graph *	graph,
		SubjectData &	subject,
		const std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		int	graph_mode = DEFAULT,
		int	representation_mode = NONE
	)

AimsGroupGraph()

void TextureToBlobs::AimsGroupGraph	(	Graph *	graph,
		std::map< std::string, SubjectData *>	data,
		std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		std::vector< surf::Clique > &	cliques,
		bool	buildAndStoreRelationsMeshes = false
	)

BlobsFromLabelTexture()

void TextureToBlobs::BlobsFromLabelTexture	(	std::vector< surf::Blob *> &	blobs,
		SubjectData &	subject
	)

BlobsFromLabelTextureGlobalMode()

void TextureToBlobs::BlobsFromLabelTextureGlobalMode	(	std::vector< surf::Blob *> &	blobs,
		SubjectData &	subject
	)

BlobsFromLabelTextureRegionMode()

void TextureToBlobs::BlobsFromLabelTextureRegionMode	(	std::vector< surf::Blob *> &	blobs,
		surf::Region &	region,
		SubjectData &	regionData
	)

buildBlobsFromClustersLists()

void TextureToBlobs::buildBlobsFromClustersLists	(	std::vector< surf::GreyLevelBlob *> &	blobs,
		GroupData &	data,
		std::vector< uint > &	clusters,
		std::vector< surf::ScaleSpaceBlob *> &	clusteredSsblobs,
		float	clustering_distance_threshold = -1.0,
		std::string	outputTextFile = "/tmp/blobsCountTable.py",
		bool	uniqueGLB = false
	)

DestroyBlobs() [1/2]

void TextureToBlobs::DestroyBlobs

(

std::vector< surf::ScaleSpaceBlob *> &

ssblobs

)

DestroyBlobs() [2/2]

void TextureToBlobs::DestroyBlobs

(

std::vector< surf::Blob *> &

blobs

)

findBlob() [1/2]

surf::GreyLevelBlob* TextureToBlobs::findBlob	(	const std::vector< surf::GreyLevelBlob *> &	blobs,
		std::string	subject_id,
		int	index
	)

findBlob() [2/2]

surf::ScaleSpaceBlob* TextureToBlobs::findBlob	(	const std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		std::string	subject_id,
		int	index
	)

findBlobIndex() [1/2]

int TextureToBlobs::findBlobIndex	(	const std::vector< surf::GreyLevelBlob *> &	blobs,
		std::string	subject_id,
		int	index
	)

findBlobIndex() [2/2]

int TextureToBlobs::findBlobIndex	(	const std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		std::string	subject_id,
		int	index
	)

getBlobsFromPrimalSketch()

void TextureToBlobs::getBlobsFromPrimalSketch	(	SubjectData &	subject,
		aims::PrimalSketch< AimsSurface< 3, Void >, Texture< float > > &	sketch,
		std::vector< surf::ScaleSpaceBlob *> &	ssblobs
	)

Referenced by PrimalSketch().

getClustersListsFromGLB()

std::vector<uint> TextureToBlobs::getClustersListsFromGLB	(	std::vector< surf::GreyLevelBlob *> &	blobs,
		GroupData &	data,
		float	clustering_distance_threshold
	)

getFilteringNodes()

std::set<int> TextureToBlobs::getFilteringNodes

(

SubjectData &

subject

)

getGreyLevelBlobsFromGraph()

void TextureToBlobs::getGreyLevelBlobsFromGraph	(	Graph *	graph,
		SubjectData &	subject,
		std::vector< surf::GreyLevelBlob *> &	blobs,
		bool	initNull
	)

getOverlapMeasure()

double TextureToBlobs::getOverlapMeasure	(	Point2df	bbmin1,
		Point2df	bbmax1,
		Point2df	bbmin2,
		Point2df	bbmax2,
		uint *	no_overlap
	)

getScaleSpaceBlobsFromGraph()

void TextureToBlobs::getScaleSpaceBlobsFromGraph	(	Graph *	graph,
		std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		std::map< std::string, std::map< int, std::set< int > > > &	listGLBindices,
		bool	initNull
	)

GreyLevelBlobsFromTexture()

void TextureToBlobs::GreyLevelBlobsFromTexture	(	SubjectData &	subject,
		std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		std::string	blobsPath
	)

Referenced by PrimalSketch().

isInside2DBox()

bool TextureToBlobs::isInside2DBox	(	Point2df	p1,
		Point2df	bbmin,
		Point2df	bbmax
	)

PrimalSketch() [1/2]

void TextureToBlobs::PrimalSketch	(	std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		SubjectData &	subject,
		std::string	scaleSpacePath,
		std::string	blobsPath,
		bool	recover = false,
		float	scale_max = -1.0
	)

Definition at line 54 of file primalsketch_operations.h.

References getBlobsFromPrimalSketch(), GreyLevelBlobsFromTexture(), and PrimalSketchGlobalMode().

PrimalSketch() [2/2]

void TextureToBlobs::PrimalSketch	(	SubjectData &	subject,
		std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		aims::ScaleSpace< AimsSurface< 3, Void >, Texture< float > > *	ss,
		TimeTexture< float > &	blobs_texture,
		float	scale_max = -1.0
	)

PrimalSketchGlobalMode()

void TextureToBlobs::PrimalSketchGlobalMode	(	std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		SubjectData &	subject,
		std::string	scaleSpacePath,
		std::string	blobsPath,
		bool	recover = false,
		float	scale_max = -1.0
	)

Referenced by PrimalSketch().

PrimalSketchRegionMode()

void TextureToBlobs::PrimalSketchRegionMode	(	std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		surf::Region &	region,
		SubjectData &	regionData,
		std::string	scaleSpacePath,
		std::string	blobsPath,
		bool	recover = false,
		float	scale_max = -1.0
	)

ReadAimsGroupGraph()

void TextureToBlobs::ReadAimsGroupGraph	(	Graph &	graph,
		std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		std::vector< surf::Clique > &	cliques
	)

RecoverBlobsFromGLBOnly()

void TextureToBlobs::RecoverBlobsFromGLBOnly	(	Graph *	graph,
		SubjectData &	subject,
		std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		bool	initNull = true,
		float	thresholdOnT = -100.0
	)

RecoverBlobsFromGraph()

void TextureToBlobs::RecoverBlobsFromGraph	(	Graph *	graph,
		SubjectData &	subject,
		std::vector< surf::ScaleSpaceBlob *> &	ssblobs,
		bool	initNull = true
	)

recoverGreyLevelBlobs()

std::vector<surf::GreyLevelBlob *> TextureToBlobs::recoverGreyLevelBlobs

(

const std::vector< surf::ScaleSpaceBlob *> &

ssblobs

)