aimsalgo  5.1.2
Neuroimaging image processing
linearresampler_d.h
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33 
34 
35 #ifndef AIMS_RESAMPLING_LINEARRESAMPLER_D_H
36 #define AIMS_RESAMPLING_LINEARRESAMPLER_D_H
37 
39 
41 
42 #include <cmath>
43 
44 namespace aims
45 {
46 
47 template < class T >
49  : SplineResampler< T >()
50 {
51 }
52 
53 
54 template < class T >
56 {
57 }
58 
59 
60 template < class T >
62 {
63 
64  return 1;
65 
66 }
67 
68 
69 template < class T >
72  const soma::Transformation3d& invTransform3d,
73  const ChannelType& outBackground,
74  const Point3df& outLocation,
75  ChannelType& outValue, int t ) const
76 {
77 
78  const ChannelType *i = &inVolume.at( 0, 0, 0, t );
79  const ChannelType *pi, *pj;
80 
81  Point3df normalizedInLocation;
82  normalizedInLocation = invTransform3d.transform( outLocation );
83 
84  float xf = round(normalizedInLocation[0]);
85  float yf = round(normalizedInLocation[1]);
86  float zf = round(normalizedInLocation[2]);
87 
88  std::vector<int> dims = inVolume.getSize();
89  int dimx = dims[0], dimy = dims[1], dimz = dims[2];
90 
91  // The test is done using floating-point so that NaN values are excluded (the
92  // background value is returned if the transformation yields NaN)
93  if ( ( xf >= 0 ) && ( xf < dimx ) &&
94  ( yf >= 0 ) && ( yf < dimy ) &&
95  ( zf >= 0 ) && ( zf < dimz ) )
96  {
97 
98  double weightX0, weightY0, weightX1, weightY1;
99  long foldX0, foldY0, foldX1, foldY1;
100  double intensity, qi, qj;
101 
102  // first y contribution
103  int y = static_cast<long>(floor(normalizedInLocation[1]));
104  weightY0 = getBSplineWeight( y, normalizedInLocation[1] );
105  foldY0 = (long)this->getFold( y, dims[1] ) * dims[0];
106 
107  // second y contribution
108  ++ y;
109  weightY1 = getBSplineWeight( y, normalizedInLocation[1] );
110  foldY1 = (long)this->getFold( y, dimy ) * dimx;
111 
112  // first x contribution
113  int x = static_cast<long>(floor(normalizedInLocation[0]));
114  weightX0 = getBSplineWeight( x, normalizedInLocation[0] );
115  foldX0 = (long)this->getFold( x, dimx );
116 
117  // second x contribution
118  ++ x;
119  weightX1 = getBSplineWeight( x, normalizedInLocation[0] );
120  foldX1 = (long)this->getFold( x, dimx );
121 
122  if ( dimz == 1 )
123  {
124 
125  //summing contributions
126  pj = i;
127  pi = pj + (size_t)(foldY0);
128  qi = weightX0 * ( double )*( pi + (size_t)(foldX0) );
129  qi += weightX1 * ( double )*( pi + size_t(foldX1) );
130  qj = weightY0 * qi;
131  pi = pj + foldY1;
132  qi = weightX0 * ( double )*( pi + (size_t)(foldX0) );
133  qi += weightX1 * ( double )*( pi + (size_t)(foldX1) );
134  intensity = qj + weightY1 * qi;
135 
136  }
137  else
138  {
139 
140  // first z contribution
141  int z = static_cast<long>(floor(normalizedInLocation[2]));
142  pj = i + (size_t)(this->getFold( z, dimz )) * dimx *
143  dimy;
144  pi = pj + (size_t)(foldY0);
145  qi = weightX0 * ( double )*( pi + (size_t)(foldX0) );
146  qi += weightX1 * ( double )*( pi + (size_t)(foldX1) );
147  qj = weightY0 * qi;
148  pi = pj + (size_t)foldY1;
149  qi = weightX0 * ( double )*( pi + (size_t)(foldX0) );
150  qi += weightX1 * ( double )*( pi + (size_t)(foldX1) );
151  qj += weightY1 * qi;
152  intensity = getBSplineWeight( z, normalizedInLocation[2] ) * qj;
153 
154  // first z contribution
155  ++ z;
156  pj = i + (size_t)(this->getFold( z, dimz )) * dimx *
157  dimy;
158  pi = pj + (size_t)(foldY0);
159  qi = weightX0 * ( double )*( pi + (size_t)(foldX0) );
160  qi += weightX1 * ( double )*( pi + (size_t)(foldX1) );
161  qj = weightY0 * qi;
162  pi = pj + (size_t)(foldY1);
163  qi = weightX0 * ( double )*( pi + (size_t)(foldX0) );
164  qi += weightX1 * ( double )*( pi + (size_t)(foldX1) );
165  qj += weightY1 * qi;
166  intensity += getBSplineWeight( z, normalizedInLocation[2] ) * qj;
167  }
168 
169  carto::RawConverter<double, ChannelType>().convert(intensity, outValue);
170 
171  }
172  else
173  {
174 
175  outValue = outBackground;
176 
177  }
178 
179 }
180 
181 template < class T >
182 double LinearResampler< T >::getBSplineWeight( int i, double x ) const
183 {
184 
185  x = fabs( x - ( double )i );
186  return ( x > 1.0 ) ? 0.0 : 1.0 - x;
187 
188 }
189 
190 } // namespace aims
191 
192 #endif
double getBSplineWeight(int i, double x) const CARTO_OVERRIDE
Returns .
int getOrder() const CARTO_OVERRIDE
Spline order (1 to 7)
void doResampleChannel(const carto::Volume< ChannelType > &inVolume, const soma::Transformation3d &transform3d, const ChannelType &outBackground, const Point3df &outLocation, ChannelType &outValue, int t) const CARTO_OVERRIDE
B-Spline-based resampling.
void convert(const INP &in, OUTP &out) const
std::vector< int > getSize() const
const T & at(long x, long y=0, long z=0, long t=0) const
Point3dd transform(double x, double y, double z) const