aims::RoiStats Class Reference

#include <aims/roi/roistat.h>

Inheritance diagram for aims::RoiStats:

Collaboration diagram for aims::RoiStats:

Public Member Functions
	RoiStats (Resampler< float > *interpolator, RoiSelector *roiSel)
virtual	~RoiStats ()
template<typename T >
void	populate (carto::rc_ptr< carto::Volume< T > > &image, AimsRoi &roi, const AffineTransformation3d &motion)
std::vector< float >	tacByStructName (std::string s)
void	applyGtm (RoiGtm &rgtm)
void	streamout (char *out=NULL)
bool	isGtmCorrected ()
void	setGtmCorrected ()
Public Member Functions inherited from Graph
	Graph (const std::string &s="")
	Graph (const FactoryPtr factory, const std::string &s="")
virtual	~Graph ()
void	extract (Graph &graph, InputIterator iv1, InputIterator iv2)
void	clear ()
Vertex *	addVertex (const std::string &s="")
Vertex *	cloneVertex (const Vertex *vertex)
bool	hasVertex (const Vertex *vertex) const
void	removeVertex (Vertex *vertex)
Vertex *	randomVertex () const
const std::set< Vertex * > &	vertices () const
std::set< Vertex * >	getVerticesWith (const std::string &s) const
std::set< Vertex * >	getVerticesWith (const std::string &s, const T &t) const
Edge *	addUndirectedEdge (Vertex *vertex1, Vertex *vertex2, std::string s)
Edge *	addEdge (Vertex *vertex1, Vertex *vertex2, std::string s="")
Edge *	addDirectedEdge (Vertex *vertex1, Vertex *vertex2, std::string s)
bool	hasEdge (const Edge *edge) const
void	removeEdge (Edge *edge)
const std::set< Edge * > &	edges () const
std::set< Edge * >	edges (const Vertex *vertex1, const Vertex *vertex2) const
std::set< Edge * >	getEdgesWith (const std::string &s) const
std::set< Edge * >	getEdgesWith (const std::string &s, const T &t) const
iterator	begin ()
iterator	end ()
const_iterator	begin () const
const_iterator	end () const
reverse_iterator	rbegin ()
reverse_iterator	rend ()
const_reverse_iterator	rbegin () const
const_reverse_iterator	rend () const
size_t	order () const
size_t	size () const __attribute__((__deprecated__("use edgeSize() for " "the number of edges. In a future release
size_t	size () will return the " "number properties as it does in GenericObject")))
size_t	edgesSize () const
virtual bool	isUndirected () const
virtual bool	isDirected () const
virtual bool	check (const carto::SyntaxSet &syntax, std::set< std::string > &missing) const
void	clear ()
Vertex *	addVertex (const std::string &s="")
Vertex *	cloneVertex (const Vertex *vertex)
bool	hasVertex (const Vertex *vertex) const
void	removeVertex (Vertex *vertex)
Vertex *	randomVertex () const
const std::set< Vertex * > &	vertices () const
std::set< Vertex * >	getVerticesWith (const std::string &s) const
std::set< Vertex * >	getVerticesWith (const std::string &s, const T &t) const
Edge *	addUndirectedEdge (Vertex *vertex1, Vertex *vertex2, std::string s)
Edge *	addEdge (Vertex *vertex1, Vertex *vertex2, std::string s="")
Edge *	addDirectedEdge (Vertex *vertex1, Vertex *vertex2, std::string s)
bool	hasEdge (const Edge *edge) const
void	removeEdge (Edge *edge)
const std::set< Edge * > &	edges () const
std::set< Edge * >	edges (const Vertex *vertex1, const Vertex *vertex2) const
std::set< Edge * >	getEdgesWith (const std::string &s) const
std::set< Edge * >	getEdgesWith (const std::string &s, const T &t) const
iterator	begin ()
iterator	end ()
const_iterator	begin () const
const_iterator	end () const
reverse_iterator	rbegin ()
reverse_iterator	rend ()
const_reverse_iterator	rbegin () const
const_reverse_iterator	rend () const
size_t	order () const
size_t	size () const __attribute__((__deprecated__("use edgeSize() for " "the number of edges. In a future release
size_t	size () will return the " "number properties as it does in GenericObject")))
size_t	edgesSize () const
virtual bool	isUndirected () const
virtual bool	isDirected () const
virtual bool	check (const carto::SyntaxSet &syntax, std::set< std::string > &missing) const
Public Member Functions inherited from GraphObject
virtual	~GraphObject ()
Public Member Functions inherited from carto::SyntaxedObject< class >
	SyntaxedObject (const std::string &s)
	SyntaxedObject (const SyntaxedObject &x)
	SyntaxedObject (const SyntaxedObject< PropertySet > &x)

Protected Attributes
Resampler< float > *	_interpolator
RoiSelector *	_roiSel
bool	_isGtmCorrected
Protected Attributes inherited from Graph
FactoryPtr	_factory

Additional Inherited Members
Public Types inherited from Graph
typedef std::set< Vertex * >	VSet
typedef std::set< Edge * >	ESet
typedef carto::rc_ptr< GraphFactory >	FactoryPtr
typedef VSet::value_type	value_type
typedef VSet::pointer	pointer
typedef VSet::reference	reference
typedef VSet::const_reference	const_reference
typedef VSet::iterator	iterator
typedef VSet::const_iterator	const_iterator
typedef VSet::reverse_iterator	reverse_iterator
typedef VSet::const_reverse_iterator	const_reverse_iterator
Public Types inherited from carto::SyntaxedObject< class >
typedef internal::SyntaxedObjectSwitch< T, SUPERSUBCLASS(Interface, T)>::ContentType	ContentType
Protected Member Functions inherited from GraphObject
	GraphObject (const std::string &s)
	GraphObject (const GraphObject &x)

Detailed Description

Definition at line 55 of file roistat.h.

Constructor & Destructor Documentation

RoiStats()

aims::RoiStats::RoiStats	(	Resampler< float > *	interpolator,
		RoiSelector *	roiSel
	)

~RoiStats()

virtual aims::RoiStats::~RoiStats ( )

virtual

Member Function Documentation

applyGtm()

void aims::RoiStats::applyGtm

(

RoiGtm &

rgtm

)

isGtmCorrected()

bool aims::RoiStats::isGtmCorrected ( )

inline

Definition at line 69 of file roistat.h.

populate()

template<typename T >

void aims::RoiStats::populate	(	carto::rc_ptr< carto::Volume< T > > &	image,
		AimsRoi &	roi,
		const AffineTransformation3d &	motion
	)

Definition at line 81 of file roistat.h.

References _interpolator, _roiSel, Graph::addVertex(), ASSERT, carto::VolumeRef< class >::at(), BaseTree::children(), carto::VolumeRef< class >::copyHeaderFrom(), aims::Resampler< T >::doit(), carto::PropertySet::getProperty(), carto::VolumeRef< class >::getSize(), Graph::getVerticesWith(), carto::PropertySet::hasProperty(), aims::meshdistance::max(), aims::meshdistance::min(), aims::Resampler< T >::setRef(), carto::VolumeRef< class >::setVoxelSize(), square(), and aims::AimsRoi::VertByNameAndDescendantName().

setGtmCorrected()

void aims::RoiStats::setGtmCorrected ( )

inline

Definition at line 70 of file roistat.h.

streamout()

void aims::RoiStats::streamout

(

char *

out = NULL

)

tacByStructName()

std::vector<float> aims::RoiStats::tacByStructName

(

std::string

s

)

Member Data Documentation

_interpolator

Resampler< float >* aims::RoiStats::_interpolator

protected

Definition at line 73 of file roistat.h.

Referenced by populate().

_isGtmCorrected

bool aims::RoiStats::_isGtmCorrected

protected

Definition at line 75 of file roistat.h.

_roiSel

RoiSelector* aims::RoiStats::_roiSel

protected

Definition at line 74 of file roistat.h.

Referenced by populate().

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The documentation for this class was generated from the following file:

• aims/roi/roistat.h