aimsalgo  5.1.2
Neuroimaging image processing
Public Member Functions | List of all members
aims::ClusterArgMaker Class Reference

#include <aims/roi/clusterArg.h>

Public Member Functions

 ClusterArgMaker (const std::string &outfilename, Connectivity::Type conn=Connectivity::CONNECTIVITY_18_XYZ, int minsz=0, const std::string &mtxfile="", bool mkmesh=true, float maxclear=5., float maxerr=0.1, uint minfac=50, bool bin=false, float low=-FLT_MAX, float up=FLT_MAX)
 
 ~ClusterArgMaker ()
 
void setFilename (const std::string &n)
 
std::string filename () const
 
void setConnectivity (Connectivity::Type conn)
 
Connectivity::Type connectivity () const
 
void setMinClusterSize (int sz)
 
int minClusterSize () const
 
void setTransformationFilename (const std::string &mtxfile)
 
std::string transformationFilename () const
 
void setMeshFlag (bool x)
 
bool meshFlag () const
 
void setDecimationMaxClearance (float x)
 
float decimationMaxClearance () const
 
void setDecimationMaxError (float x)
 
float decimationMaxError () const
 
void setMinFacetNumber (uint x)
 
uint minFacetNumber () const
 
void setBinarize (bool x)
 
bool binarize () const
 
void setLowThreshold (float x)
 
float lowThreshold () const
 
void setUpperThershold (float x)
 
float upperThreshold () const
 
template<typename T >
void make (Graph &gr, const carto::rc_ptr< carto::Volume< T > > &data)
 

Detailed Description

Definition at line 47 of file clusterArg.h.

Constructor & Destructor Documentation

◆ ClusterArgMaker()

aims::ClusterArgMaker::ClusterArgMaker ( const std::string &  outfilename,
Connectivity::Type  conn = Connectivity::CONNECTIVITY_18_XYZ,
int  minsz = 0,
const std::string &  mtxfile = "",
bool  mkmesh = true,
float  maxclear = 5.,
float  maxerr = 0.1,
uint  minfac = 50,
bool  bin = false,
float  low = -FLT_MAX,
float  up = FLT_MAX 
)

◆ ~ClusterArgMaker()

aims::ClusterArgMaker::~ClusterArgMaker ( )

Member Function Documentation

◆ binarize()

bool aims::ClusterArgMaker::binarize ( ) const
inline

Definition at line 76 of file clusterArg.h.

◆ connectivity()

Connectivity::Type aims::ClusterArgMaker::connectivity ( ) const
inline

Definition at line 61 of file clusterArg.h.

◆ decimationMaxClearance()

float aims::ClusterArgMaker::decimationMaxClearance ( ) const
inline

Definition at line 70 of file clusterArg.h.

◆ decimationMaxError()

float aims::ClusterArgMaker::decimationMaxError ( ) const
inline

Definition at line 72 of file clusterArg.h.

◆ filename()

std::string aims::ClusterArgMaker::filename ( ) const
inline

Definition at line 59 of file clusterArg.h.

◆ lowThreshold()

float aims::ClusterArgMaker::lowThreshold ( ) const
inline

Definition at line 78 of file clusterArg.h.

◆ make()

template<typename T >
void aims::ClusterArgMaker::make ( Graph &  gr,
const carto::rc_ptr< carto::Volume< T > > &  data 
)

Definition at line 57 of file clusterArg_d.h.

References Graph::addVertex(), AIMS_BETWEEN, AIMS_GREATER_OR_EQUAL_TO, AIMS_GREATER_THAN, AIMS_LOWER_OR_EQUAL_TO, aims::GraphElementCode::attribute, AimsThreshold< class, class >::bin(), carto::Converter< class, class >::convert(), carto::RawConverter< class, class >::convert(), aims::GraphElementCode::dataType, Mesher::doit(), carto::VolumeRef< class >::fillBorder(), carto::VolumeRef< class >::getSize(), aims::GraphElementCode::Global, aims::GraphElementCode::global_filename, aims::GraphElementCode::global_index_attribute, aims::GraphElementCode::id, aims::AffineTransformation3d::inverse(), Mesher::LAPLACIAN, aims::GraphElementCode::local_file_attribute, soma::AffineTransformation3dBase::matrix(), aims::SurfaceManip::meshMerge(), aims::GraphElementCode::objectType, Mesher::setDecimation(), Mesher::setMinFacetNumber(), BucketMap< Void >::setSizeXYZT(), Mesher::setSmoothing(), Mesher::setSmoothingLaplacian(), BucketMap< Void >::sizeT(), BucketMap< Void >::sizeX(), BucketMap< Void >::sizeY(), BucketMap< Void >::sizeZ(), aims::GraphElementCode::storageType, aims::GraphElementCode::syntax, and soma::Transformation3d::transform().

◆ meshFlag()

bool aims::ClusterArgMaker::meshFlag ( ) const
inline

Definition at line 68 of file clusterArg.h.

◆ minClusterSize()

int aims::ClusterArgMaker::minClusterSize ( ) const
inline

Definition at line 63 of file clusterArg.h.

◆ minFacetNumber()

uint aims::ClusterArgMaker::minFacetNumber ( ) const
inline

Definition at line 74 of file clusterArg.h.

◆ setBinarize()

void aims::ClusterArgMaker::setBinarize ( bool  x)
inline

Definition at line 75 of file clusterArg.h.

◆ setConnectivity()

void aims::ClusterArgMaker::setConnectivity ( Connectivity::Type  conn)
inline

Definition at line 60 of file clusterArg.h.

◆ setDecimationMaxClearance()

void aims::ClusterArgMaker::setDecimationMaxClearance ( float  x)
inline

Definition at line 69 of file clusterArg.h.

◆ setDecimationMaxError()

void aims::ClusterArgMaker::setDecimationMaxError ( float  x)
inline

Definition at line 71 of file clusterArg.h.

◆ setFilename()

void aims::ClusterArgMaker::setFilename ( const std::string &  n)
inline

Definition at line 58 of file clusterArg.h.

◆ setLowThreshold()

void aims::ClusterArgMaker::setLowThreshold ( float  x)
inline

Definition at line 77 of file clusterArg.h.

◆ setMeshFlag()

void aims::ClusterArgMaker::setMeshFlag ( bool  x)
inline

Definition at line 67 of file clusterArg.h.

◆ setMinClusterSize()

void aims::ClusterArgMaker::setMinClusterSize ( int  sz)
inline

Definition at line 62 of file clusterArg.h.

◆ setMinFacetNumber()

void aims::ClusterArgMaker::setMinFacetNumber ( uint  x)
inline

Definition at line 73 of file clusterArg.h.

◆ setTransformationFilename()

void aims::ClusterArgMaker::setTransformationFilename ( const std::string &  mtxfile)
inline

Definition at line 64 of file clusterArg.h.

◆ setUpperThershold()

void aims::ClusterArgMaker::setUpperThershold ( float  x)
inline

Definition at line 79 of file clusterArg.h.

◆ transformationFilename()

std::string aims::ClusterArgMaker::transformationFilename ( ) const
inline

Definition at line 66 of file clusterArg.h.

◆ upperThreshold()

float aims::ClusterArgMaker::upperThreshold ( ) const
inline

Definition at line 80 of file clusterArg.h.

The documentation for this class was generated from the following files: