Template surface type. More...

#include <anatomist/surface/surface.h>

Inheritance diagram for anatomist::ASurface< D >:

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Collaboration diagram for anatomist::ASurface< D >:

[legend]

Public Types
typedef AimsVector< uint, D >	Triangle

typedef AimsSurface< D, Void >	SurfaceType

typedef AimsTimeSurface< D, Void >	TimeSurfaceType

Public Types inherited from anatomist::AObject
enum	ObjectType { VOLUME , BUCKET , FACET , TRIANG , LIST , VECTOR , MAP , SET , GRAPH , GRAPHOBJECT , VOLSURF , MULTISURF , MULTIBUCKET , MULTIVOLUME , FUSION2D , FUSION3D , FASCICLE , FASCICLEGRAPH , TEXTURE , TEXSURFACE , FUSION2DMESH , VECTORFIELD , OTHER }
	Base object type identifiers. More...

typedef std::set< MObject * >	ParentList
	Storage type for parent objects (multi-objects containing this one) More...

typedef ObjectMenu (	ObjectMenuRegistrerFunction) (const AObject objtype, ObjectMenu menu)
	dynamic menu registration function More...

Public Types inherited from carto::RCObject
typedef int	RefCounterType

Public Types inherited from anatomist::GLComponent
enum	glTextureMode { glGEOMETRIC , glLINEAR , glREPLACE , glDECAL , glBLEND , glADD , glCOMBINE , glLINEAR_A_IF_A , glLINEAR_ON_DEFINED , glLINEAR_A_IF_B = glLINEAR_ON_DEFINED , glLINEAR_A_IF_NOT_A , glLINEAR_A_IF_NOT_B , glLINEAR_B_IF_A , glLINEAR_B_IF_B , glLINEAR_B_IF_NOT_A , glLINEAR_B_IF_NOT_B , glLINEAR_A_IF_A_ALPHA , glLINEAR_A_IF_NOT_B_ALPHA , glLINEAR_B_IF_B_ALPHA , glLINEAR_B_IF_NOT_A_ALPHA , glMAX_CHANNEL , glMIN_CHANNEL , glMAX_ALPHA , glMIN_ALPHA , glGEOMETRIC_SQRT , glGEOMETRIC_LIGHTEN }

enum	glTextureFiltering { glFILT_NEAREST , glFILT_LINEAR }

enum	glPart { glGENERAL , glBODY , glMATERIAL , glGEOMETRY , glPALETTE , glREFERENTIAL , glTEXIMAGE , glTEXENV , glNOPART , glTEXIMAGE_NUM , glTEXENV_NUM }
	GL object parts, each driving a GL list. More...

enum	glAutoTexturingMode { glTEX_MANUAL , glTEX_OBJECT_LINEAR , glTEX_EYE_LINEAR , glTEX_SPHERE_MAP , glTEX_REFLECTION_MAP , glTEX_NORMAL_MAP }

typedef ViewState::glSelectRenderMode	glSelectRenderMode

Public Member Functions
	ASurface (const char *filename="")

	~ASurface ()

virtual AObject *	clone (bool shallow=true)
	Makes a copy of the object, with a duplicated object structure, palette and material, but which may share the underlying low-level data object (Aims object). More...

virtual Tree *	optionTree () const
	Menu tree for new options, see object/optionMatcher.h. More...

virtual void	UpdateMinAndMax ()

virtual bool	render (anatomist::PrimList &primitiveList, const anatomist::ViewState &viewState)
	rendering (generally 2D or 3D using OpenGL). More...

virtual bool	glMakeBodyGLL (const anatomist::ViewState &viewState, const anatomist::GLList &glList) const
	If you want to make a non-standard GL display list for the body geometry, overload this function to fill `gllist`. More...

const carto::rc_ptr< TimeSurfaceType >	surface () const

carto::rc_ptr< TimeSurfaceType >	surface ()

void	setSurface (carto::rc_ptr< TimeSurfaceType > surf)

void	setSurface (TimeSurfaceType *surf)
	Using this method, the ASurface takes ownership of the surface (by making a new rc_ptr on it) More...

const SurfaceType *	surfaceOfTime (float time) const

float	actualTime (float time) const

virtual float	MinT () const
	Obsolete, deprecated. More...

virtual float	MaxT () const
	Obsolete, deprecated. More...

virtual bool	boundingBox (std::vector< float > &bmin, std::vector< float > &bmax) const
	Fills bmin and bmax with the N-D bounding box extrema in the object's referential coordinates. More...

virtual AObject *	objectAt (const std::vector< float > &pos, float tol=0)
	selection is disabled for surfaces More...

bool	Is2DObject ()
	Can't be display in 2D windows. More...

bool	Is3DObject ()
	Can be display in 3D windows. More...

virtual unsigned	glNumVertex (const ViewState &) const

virtual const GLfloat *	glVertexArray (const ViewState &) const

virtual unsigned	glNumNormal (const ViewState &) const

virtual const GLfloat *	glNormalArray (const ViewState &) const
	normals array (optional), default=0 (no normals, flat shaded faces) More...

virtual unsigned	glNumPolygon (const ViewState &) const

virtual unsigned	glPolygonSize (const ViewState &) const
	number of vertices per polygon (default = 3: triangles) More...

virtual const GLuint *	glPolygonArray (const ViewState &) const

virtual bool	loadable () const

virtual bool	savable () const

virtual bool	save (const std::string &filename)

virtual bool	reload (const std::string &filename)
	Re-reads objects from disk. More...

SurfaceType *	surfaceOfTime (float time)

bool	isPlanar () const

void	invertPolygons ()

virtual void	notifyObservers (void *=0)
	If this object has changed, as indicated by the hasChanged method, then notify all of its observers. More...

virtual carto::GenericObject *	attributed ()

virtual const carto::GenericObject *	attributed () const

virtual void	setInternalsChanged ()
	Notifies some underlying lower-level objects have changed. More...

Public Member Functions inherited from anatomist::AGLObject
	AGLObject ()

virtual	~AGLObject ()

virtual const GLComponent *	glAPI () const

virtual GLComponent *	glAPI ()

virtual void	glSetChanged (glPart, bool=true) const

virtual void	glSetTexImageChanged (bool=true, unsigned tex=0) const

virtual void	glSetTexEnvChanged (bool=true, unsigned tex=0) const

virtual const Material *	glMaterial () const

virtual const AObjectPalette *	glPalette (unsigned tex=0) const

virtual std::string	viewStateID (glPart part, const ViewState &) const
	Makes a unique ID from a viewstate. More...

Public Member Functions inherited from anatomist::AObject
	AObject (const std::string &filename="")

virtual	~AObject ()
	AObject subclasses must call cleanup() in their destructor. More...

virtual const MObject *	mObjectAPI () const

virtual MObject *	mObjectAPI ()

int	type () const
	Object type identifier. More...

void	setType (int type)
	Method to set type id, because type() is not virtual. More...

int	id () const
	Unique ID assigned upon construction, but somewhat unused now... More...

std::string	name () const
	Name shown in control window. More...

std::string	fileName () const
	File name (if any) for loaded objects. More...

void	setName (const std::string &n)

void	setFileName (const std::string &filename)

void	setId (int id)

virtual int	isMultiObject () const
	maybe not necessary ?: we can use dynamic_cast instead More...

virtual bool	boundingBox2D (std::vector< float > &bmin, std::vector< float > &bmax) const
	Bounding box in 2D views mode. More...

virtual std::vector< float >	voxelSize () const
	Returns at least 4 sizes. For 3D objects, returns (1, 1, 1, 1) More...

virtual void	setVoxelSize (const std::vector< float > &)

virtual void	internalUpdate ()
	Updates the state of the object. More...

virtual void	adjustPalette ()
	Creates or updates object palette according to object values (if needed) More...

virtual AObjectPalette *	palette ()
	Normally, getOrCreatePalette() should be used instead of this function in most cases. More...

virtual const AObjectPalette *	palette () const

virtual void	setPalette (const AObjectPalette &palette)

virtual const AObjectPalette *	getOrCreatePalette () const
	User normally calls this function. More...

virtual void	createDefaultPalette (const std::string &name="")
	function called by getOrCreatePalette() - overloadable, need not be called directly More...

virtual void	SetMaterial (const Material &mat)

virtual Material &	GetMaterial ()

virtual const Material &	material () const

Referential *	getReferential () const

AObject *	referentialInheritance () const
	if not null, the object referential is inherited from this object More...

virtual void	setReferentialInheritance (AObject *ao)

virtual void	setReferential (Referential *ref)

virtual AObject *	fallbackReferentialInheritance () const
	object to take referential from when no ref is assigned More...

const Referential *	previousReferential () const
	Referential that the object was in before the last change. More...

virtual ObjectMenu *	optionMenu () const

int	InMemory () const
	For objects loading only when needed (not used yet...) More...

int	Visible () const
	Visibility in control window. More...

void	SetVisibility (int v)

ParentList &	Parents ()
	List of multi-objects containing this one. Obsolete: use parents() More...

ParentList &	parents ()
	List of multi-objects containing this one. More...

const ParentList &	parents () const
	List of multi-objects containing this one. More...

virtual void	RegisterParent (MObject *pob)

virtual void	UnregisterParent (MObject *pob)

const std::set< AWindow * > &	WinList ()
	List of windows showing this object. More...

virtual void	registerWindow (AWindow *window)

virtual void	unregisterWindow (AWindow *window)

virtual bool	IsFusion2DAllowed ()

virtual bool	textured2D () const
	true if 2D rendering uses a textured plane (not a full openGL object) More...

virtual bool	isTransparent () const

virtual bool	renderingIsObserverDependent () const
	true only if the rendering (openGL) of the object changes with the observer position/orientation of the view (which is rare, but typically needed for Volume Rendering) More...

virtual int	CanBeDestroyed ()
	Allows / unallows destruction of object. More...

virtual void	setReferenceChanged ()

bool	hasReferenceChanged () const

virtual void	clearHasChangedFlags () const
	Reset has-changed flags. More...

bool	userModified () const
	if the object has been modified by user interaction, and needs saving More...

void	setUserModified (bool state=true)
	if the object has been modified by user interaction, and needs saving More...

virtual AObject *	objectAt (const std::vector< float > &pos, float tol, const Referential *orgref, const Point3df &orggeom)
	Same with origin window referential. More...

virtual void	setGeomExtrema ()
	Scans the object internals and determines its geometry extrema. More...

virtual void	SetExtrema ()
	Scans the object internals and determines its (texture) extrema values. More...

virtual bool	hasTexture () const
	Textured objects have values associated with a geometric coordinate. More...

virtual unsigned	dimTexture () const
	Number of texture values for a point. More...

virtual float	mixedTexValue (const std::vector< float > &pos, const Referential *orgRef) const
	Gets a "mixed" texture value at a given space / time location. More...

virtual float	mixedTexValue (const std::vector< float > &pos) const
	Same as above except that coordinates are not transformed but taken in object coordinates system. More...

virtual std::vector< float >	texValues (const std::vector< float > &pos, const Referential *orgRef) const
	Gets the array of texture values at a given location. More...

virtual std::vector< float >	texValues (const std::vector< float > &pos) const

virtual std::string	objectFullTypeName (void) const
	Get Object Full Type Name. More...

bool	save (const std::string &filename, bool onlyIfModified)

virtual bool	printTalairachCoord (const Point3df &, const Referential *) const
	should be replaced by a real referential More...

void	setHeaderOptions ()
	Set some object properties according to the header (.minf), such as material, palette etc. More...

virtual void	setProperties (carto::Object options)
	Same as setHeaderOptions() and used by it, allows passing a dictionary. More...

virtual void	storeHeaderOptions ()
	Store some object properties into the header (.minf), such as material, palette etc before saving the object. More...

virtual carto::Object	makeHeaderOptions () const
	get object properties into a generic object, such as material, palette etc before saving the object More...

long	loadDate () const
	Time the object was created, loaded or reloaded. More...

void	setLoadDate (long t)

virtual void	update (const Observable observable, void arg)
	This method is called whenever the observed object is changed. More...

bool	isCopy () const

void	setCopyFlag (bool x=true)

virtual std::string	toolTip () const
	tooltip displayed in 3D views (HTML). More...

carto::Object	aimsMeshFromGLComponent ()

Public Member Functions inherited from anatomist::Observable
	Observable ()
	Construct an Observable with zero observers. More...

virtual	~Observable ()
	does nothing More...

void	addObserver (Observer *observer)
	Adds an observer to the set of observers for this object. More...

void	deleteObserver (Observer *observer)
	Deletes an observer from the set of observers of this object. More...

void	deleteObservers ()
	Clears the observer list so that this object no longer has any observers (doesn't call any observer method - see notifyUnregisterObservers() for this ) More...

int	countObservers () const
	Returns the number of observers of this object. More...

virtual void	notifyUnregisterObservers ()
	Notifies observable destruction to all observers and unregisters them. More...

bool	hasChanged () const
	Tests if this object has changed. More...

bool	obsHasChanged (int) const
	only valid during an Observer::update() More...

bool	obsHasChanged (const std::string &) const
	only valid during an Observer::update() More...

void	setChanged () const
	Indicates that this object has changed. More...

Public Member Functions inherited from carto::SharedObject
	SharedObject ()

	SharedObject (const SharedObject &x)

virtual	~SharedObject ()

SharedObject &	operator= (const SharedObject &)

bool	testDeletable ()

bool	tryDelete ()

Public Member Functions inherited from carto::WeakObject
void	attachWeakPtr (weak_ptr< T > &) const

void	detachWeakPtr (weak_ptr< T > &) const

void	attachWeakPtr (weak_shared_ptr< T > &) const

void	detachWeakPtr (weak_shared_ptr< T > &) const

virtual	~WeakObject ()

Public Member Functions inherited from carto::RCObject
	RCObject ()

	RCObject (const RCObject &)

RCObject &	operator= (const RCObject &)

virtual	~RCObject ()

Public Member Functions inherited from anatomist::Observer
virtual	~Observer ()

Public Member Functions inherited from anatomist::GLComponent
	GLComponent ()

virtual	~GLComponent ()

void	clearLists ()

virtual const Sliceable *	sliceableAPI () const

virtual Sliceable *	sliceableAPI ()

virtual void	glClearHasChangedFlags () const

virtual bool	glHasChanged (glPart) const

void	setShader (const Shader &shader)

void	removeShader ()

void	setupShader ()
	create, setup, or remove the shader More...

const Shader *	getShader () const

Shader *	getShader ()

virtual void	setShaderParameters (const Shader &shader, const ViewState &state) const

virtual unsigned long	glMaxNumDisplayedPolygons () const
	Limit to the number of displayed polygons (default: 0, unlimited or ) global default value) More...

virtual void	glSetMaxNumDisplayedPolygons (unsigned long n)

virtual unsigned	glNumTextures () const

virtual unsigned	glNumTextures (const ViewState &) const

virtual glTextureMode	glTexMode (unsigned tex=0) const

virtual void	glSetTexMode (glTextureMode mode, unsigned tex=0)

virtual float	glTexRate (unsigned tex=0) const

virtual void	glSetTexRate (float rate, unsigned tex=0)

virtual glTextureFiltering	glTexFiltering (unsigned tex=0) const

virtual void	glSetTexFiltering (glTextureFiltering x, unsigned tex=0)

virtual glAutoTexturingMode	glAutoTexMode (unsigned tex=0) const

virtual void	glSetAutoTexMode (glAutoTexturingMode mode, unsigned tex=0)

virtual const float *	glAutoTexParams (unsigned coord=0, unsigned tex=0) const

virtual void	glSetAutoTexParams (const float *params, unsigned coord=0, unsigned tex=0)

virtual bool	glTexImageChanged (unsigned tex=0) const

virtual bool	glTexEnvChanged (unsigned tex=0) const

virtual GLint	glGLTexMode (unsigned tex=0) const

virtual GLint	glGLTexFiltering (unsigned tex=0) const

virtual void	glSetTexRGBInterpolation (bool x, unsigned tex=0)

virtual bool	glTexRGBInterpolation (unsigned tex=0) const

virtual unsigned	glDimTex (const ViewState &, unsigned tex=0) const
	texture dimension (1, 2 [or 3]) More...

virtual unsigned	glTexCoordSize (const ViewState &, unsigned tex=0) const
	texture array size (must be >= numVertex to work), defalut=0 More...

virtual const GLfloat *	glTexCoordArray (const ViewState &, unsigned tex=0) const

virtual const TexExtrema &	glTexExtrema (unsigned tex=0) const

virtual TexExtrema &	glTexExtrema (unsigned tex=0)

virtual GLPrimitives	glMainGLL (const ViewState &)

virtual void	glGarbageCollector (int nkept=-1)
	Frees unused display lists. More...

unsigned	glStateMemory () const
	Number of unused display lists in different states kept in memory (default: 4) More...

virtual void	glSetStateMemory (unsigned n)

virtual void	glBeforeBodyGLL (const ViewState &state, GLPrimitives &pl) const
	GL list to execute before the body is rendered. More...

virtual void	glAfterBodyGLL (const ViewState &state, GLPrimitives &pl) const
	GL list to execute after the body is rendered. More...

virtual carto::VolumeRef< AimsRGBA >	glBuildTexImage (const ViewState &state, unsigned tex, int dimx=-1, int dimy=-1, bool useTexScale=true) const
	If you make non-standard textures (ie not from a palette), overload this function. More...

virtual bool	glMakeTexImage (const ViewState &state, const GLTexture &gltex, unsigned tex) const
	If you make non-standard textures (ie not from a palette), overload this function to fill `gltex`. More...

virtual bool	glMakeTexEnvGLL (const ViewState &state, const GLList &gllist, unsigned tex) const

virtual GLPrimitives	glBodyGLL (const ViewState &state) const

virtual GLPrimitives	glMaterialGLL (const ViewState &state) const

virtual GLPrimitives	glTexNameGLL (const ViewState &, unsigned tex=0) const

virtual GLPrimitives	glTexEnvGLL (const ViewState &, unsigned tex=0) const

virtual void	glSetMainGLL (const std::string &state, GLPrimitives x)

virtual void	glSetBodyGLL (const std::string &state, RefGLItem x)

virtual void	glSetMaterialGLL (const std::string &state, RefGLItem x)

virtual void	glSetTexNameGLL (const std::string &state, RefGLItem x, unsigned tex=0)

virtual std::set< glTextureMode >	glAllowedTexModes (unsigned tex=0) const
	List of actually allowed texturing modes for this particular object. More...

virtual std::set< glTextureFiltering >	glAllowedTexFilterings (unsigned tex=0) const

virtual std::set< glAutoTexturingMode >	glAllowedAutoTexModes (unsigned tex=0) const

virtual bool	glAllowedTexRGBInterpolation (unsigned tex=0) const

virtual bool	glAllowedTexRate (unsigned tex=0) const

virtual carto::Object	debugInfo () const

int	glObjectID () const

virtual TexInfo &	glTexInfo (unsigned tex=0) const

Public Member Functions inherited from anatomist::PythonAObject
	PythonAObject ()

virtual	~PythonAObject ()

Static Public Member Functions
static void	invertPolygonsStatic (const std::set< AObject * > &obj)

Static Public Member Functions inherited from anatomist::AObject
static std::list< AObject * >	load (const std::string &filename)
	Static object loader: creates an objects, loads its contents. More...

static bool	reload (AObject *object, bool onlyoutdated=false)
	Reads from disk again. More...

static int	registerObjectType (const std::string &id)
	Creates a new object type number and returns it. More...

static std::string	objectTypeName (int type)

static void	setObjectMenu (std::string type, carto::rc_ptr< ObjectMenu > om)

static carto::rc_ptr< ObjectMenu >	getObjectMenu (std::string type)

static std::map< std::string, carto::rc_ptr< ObjectMenu > > &	getObjectMenuMap ()

static void	addObjectMenuRegistration (ObjectMenuRegistrerFunction)

static void	addObjectMenuRegistration (ObjectMenuRegistrerClass *)

static void	cleanStatic ()
	cleanup static global variables (called when quitting anatomist) More...

Static Public Member Functions inherited from anatomist::GLComponent
static unsigned long	glGlobalMaxNumDisplayedPolygons ()

static void	glSetGlobalMaxNumDisplayedPolygons (unsigned long n)

static GLPrimitives	glHandleTransformation (const ViewState &vs, const Referential *myref)
	helper function used in AObject::render() More...

static GLPrimitives	glPopTransformation (const ViewState &vs, const Referential *myref)
	called after glHandleTransformation() and glMainGLL() to pop the transformation matrix More...

Protected Member Functions
void	freeSurface ()

Protected Member Functions inherited from anatomist::AObject
const PrimList &	primitives () const

PrimList &	primitives ()

virtual void	cleanup ()
	must be called by objects destructors - Must be explicitly called by each object destructor since it can call virtual functions More...

virtual void	clearReferentialInheritance ()
	sets the object to get referential from to null, unregister it More...

AObject *&	_referentialInheritance ()
	provide access to derived classes More...

virtual void	unregisterObservable (Observable *)
	Called when an observable is destroyed, only called by Observable: don't use this function directly. More...

	AObject (const AObject &)
	copy constructor, protected and used only to reimplement clone() More...

Protected Member Functions inherited from anatomist::Observable
void	clearChanged () const
	Indicates that this object has no longer changed, or that it has already notified all of its observers of its most recent change. More...

void	obsSetChanged (int, bool=true) const
	int-based change flags (use enums to address them) More...

void	obsSetChanged (const std::string &, bool=true) const
	string-based change flags More...

Protected Member Functions inherited from carto::SharedObject
void	disableRefCount ()

Protected Member Functions inherited from carto::WeakObject
	WeakObject ()

	WeakObject (const WeakObject &)

WeakObject &	operator= (const WeakObject &)

Protected Member Functions inherited from anatomist::Observer
virtual void	cleanupObserver ()
	call this function from inherited classes destructors. More...

virtual void	registerObservable (Observable *)
	only called by Observable: don't use this function directly More...

const std::set< Observable * > &	observed () const

Protected Member Functions inherited from anatomist::GLComponent
void	glAddTextures (unsigned ntex=1)

Protected Attributes
carto::rc_ptr< TimeSurfaceType >	_surface

bool	_planar

Protected Attributes inherited from anatomist::AObject
int	_type
	Should be static in each object class. More...

int	_id

std::string	_name

std::string	_filename

std::set< AWindow * >	_winList

int	_inMemory

int	_visible

ParentList	_parents

Material	_material
	Should be a pointer: some objects don't have a material (2D objects) More...

Referential *	_referential
	Referentiel. More...

bool	_referenceHasChanged
	Reference has-changed flag. More...

AObjectPalette *	_palette
	Palette. More...

Additional Inherited Members
Static Protected Attributes inherited from anatomist::AObject
static std::map< std::string, int >	_objectTypes
	name-to-type map More...

static std::map< int, std::string >	_objectTypeNames
	type-to-name map More...

static std::map< std::string, carto::rc_ptr< ObjectMenu > >	_objectmenu_map
	Object Menu Map. More...

Detailed Description

template<int D>
class anatomist::ASurface< D >

Template surface type.

Definition at line 54 of file surface.h.

Member Typedef Documentation

◆ SurfaceType

template<int D>

typedef AimsSurface<D,Void> anatomist::ASurface< D >::SurfaceType

Definition at line 59 of file surface.h.

◆ TimeSurfaceType

template<int D>

typedef AimsTimeSurface<D,Void> anatomist::ASurface< D >::TimeSurfaceType

Definition at line 60 of file surface.h.

◆ Triangle

template<int D>

typedef AimsVector<uint,D> anatomist::ASurface< D >::Triangle

Definition at line 58 of file surface.h.

Constructor & Destructor Documentation

◆ ASurface()

template<int D>

anatomist::ASurface< D >::ASurface ( const char * filename = "" )

Definition at line 97 of file surface_d.h.

◆ ~ASurface()

template<int D>

anatomist::ASurface< D >::~ASurface

Definition at line 119 of file surface_d.h.

Member Function Documentation

◆ actualTime()

template<int D>

float anatomist::ASurface< D >::actualTime ( float time ) const

Definition at line 531 of file surface_d.h.

◆ attributed() [1/2]

template<int D>

carto::GenericObject * anatomist::ASurface< D >::attributed

virtual

Implements anatomist::PythonAObject.

Definition at line 562 of file surface_d.h.

◆ attributed() [2/2]

template<int D>

const carto::GenericObject * anatomist::ASurface< D >::attributed

virtual

Reimplemented from anatomist::PythonAObject.

Definition at line 576 of file surface_d.h.

◆ boundingBox()

template<int D>

bool anatomist::ASurface< D >::boundingBox	(	std::vector< float > &	bmin,
		std::vector< float > &	bmax
	)		const

virtual

Fills bmin and bmax with the N-D bounding box extrema in the object's referential coordinates.

Changed in Anatomist 4.6. The older API was using Point3df instead of vector and informed only the spatial dimensions.

An object with no spatial information (a texture for instance) may still have time information. For this reason, the resulting bounding box should always have 4 components (at least), then 4th and additional ones should be valid, even if the function returns false (no spatial bounding box).

Returns: true if object has a "spatial" bounding box (x, y, z coordinates)

Reimplemented from anatomist::AObject.

Definition at line 491 of file surface_d.h.

References AimsVector< class, D >::begin().

◆ clone()

template<int D>

AObject * anatomist::ASurface< D >::clone ( bool shallow = true )

virtual

Makes a copy of the object, with a duplicated object structure, palette and material, but which may share the underlying low-level data object (Aims object).

This is especially useful to show the same object with several palettes. This virtual method returns null by default if it is not overloaded.

Reimplemented from anatomist::AObject.

Definition at line 127 of file surface_d.h.

References anatomist::AObject::setFileName(), and anatomist::ASurface< D >::setSurface().

◆ freeSurface()

template<int D>

void anatomist::ASurface< D >::freeSurface

protected

Definition at line 140 of file surface_d.h.

◆ glMakeBodyGLL()

template<int D>

bool anatomist::ASurface< D >::glMakeBodyGLL	(	const anatomist::ViewState &	state,
		const anatomist::GLList &	gllist
	)		const

virtual

If you want to make a non-standard GL display list for the body geometry, overload this function to fill gllist.

Returns: true on success, false if the list could not be created

Reimplemented from anatomist::GLComponent.

Definition at line 112 of file surface_d.h.

◆ glNormalArray()

template<int D>

const GLfloat * anatomist::ASurface< D >::glNormalArray ( const ViewState & ) const

virtual

normals array (optional), default=0 (no normals, flat shaded faces)

Reimplemented from anatomist::GLComponent.

Definition at line 329 of file surface_d.h.

References AimsSurface< D, Void >::normal(), anatomist::ViewState::timedims, and AimsSurface< D, Void >::vertex().

◆ glNumNormal()

template<int D>

unsigned anatomist::ASurface< D >::glNumNormal ( const ViewState & s ) const

virtual

Definition at line 318 of file surface_d.h.

References AimsSurface< D, Void >::normal(), and anatomist::ViewState::timedims.

◆ glNumPolygon()

template<int D>

unsigned anatomist::ASurface< D >::glNumPolygon ( const ViewState & s ) const

virtual

Reimplemented from anatomist::GLComponent.

Definition at line 354 of file surface_d.h.

References AimsSurface< D, Void >::polygon(), and anatomist::ViewState::timedims.

◆ glNumVertex()

template<int D>

unsigned anatomist::ASurface< D >::glNumVertex ( const ViewState & s ) const

virtual

Reimplemented from anatomist::GLComponent.

Definition at line 296 of file surface_d.h.

References anatomist::ViewState::timedims, and AimsSurface< D, Void >::vertex().

◆ glPolygonArray()

template<int D>

const GLuint * anatomist::ASurface< D >::glPolygonArray ( const ViewState & s ) const

virtual

Reimplemented from anatomist::GLComponent.

Definition at line 343 of file surface_d.h.

References AimsSurface< D, Void >::polygon(), and anatomist::ViewState::timedims.

◆ glPolygonSize()

template<int D>

unsigned anatomist::ASurface< D >::glPolygonSize ( const ViewState & ) const

virtual

number of vertices per polygon (default = 3: triangles)

Reimplemented from anatomist::GLComponent.

Definition at line 555 of file surface_d.h.

◆ glVertexArray()

template<int D>

const GLfloat * anatomist::ASurface< D >::glVertexArray ( const ViewState & s ) const

virtual

Reimplemented from anatomist::GLComponent.

Definition at line 307 of file surface_d.h.

References anatomist::ViewState::timedims, and AimsSurface< D, Void >::vertex().

◆ invertPolygons()

template<int D>

void anatomist::ASurface< D >::invertPolygons

Definition at line 481 of file surface_d.h.

References aims::SurfaceManip::invertSurfacePolygons().

◆ invertPolygonsStatic()

template<int D>

void anatomist::ASurface< D >::invertPolygonsStatic ( const std::set< AObject * > & obj )

static

Definition at line 471 of file surface_d.h.

◆ Is2DObject()

template<int D>

bool anatomist::ASurface< D >::Is2DObject ( )

inlinevirtual

Can't be display in 2D windows.

Implements anatomist::AObject.

Definition at line 96 of file surface.h.

◆ Is3DObject()

template<int D>

bool anatomist::ASurface< D >::Is3DObject ( )

inlinevirtual

Can be display in 3D windows.

Implements anatomist::AObject.

Definition at line 98 of file surface.h.

◆ isPlanar()

template<int D>

bool anatomist::ASurface< D >::isPlanar ( ) const

inline

Definition at line 115 of file surface.h.

References anatomist::ASurface< D >::_planar.

◆ loadable()

template<int D>

virtual bool anatomist::ASurface< D >::loadable ( ) const

inlinevirtual

Reimplemented from anatomist::AObject.

Definition at line 108 of file surface.h.

◆ MaxT()

template<int D>

float anatomist::ASurface< D >::MaxT ( ) const

virtual

Obsolete, deprecated.

Reimplemented from anatomist::AObject.

Definition at line 216 of file surface_d.h.

◆ MinT()

template<int D>

float anatomist::ASurface< D >::MinT ( ) const

virtual

Obsolete, deprecated.

Reimplemented from anatomist::AObject.

Definition at line 225 of file surface_d.h.

◆ notifyObservers()

template<int D>

void anatomist::ASurface< D >::notifyObservers ( void * arg = 0 )

virtual

If this object has changed, as indicated by the hasChanged method, then notify all of its observers.

Then call the clearChanged method to indicate that this object has no longer changed. \ Each Observer.has its update method called.

Parameters

arg	anything you want to pass to the observers

Reimplemented from anatomist::Observable.

Definition at line 547 of file surface_d.h.

References anatomist::Observable::notifyObservers().

◆ objectAt()

template<int D>

AObject * anatomist::ASurface< D >::objectAt	(	const std::vector< float > &	pos,
		float	tol = `0`
	)

virtual

selection is disabled for surfaces

Reimplemented from anatomist::AObject.

Definition at line 430 of file surface_d.h.

◆ optionTree()

template<int D>

Tree * anatomist::ASurface< D >::optionTree ( ) const

virtual

Menu tree for new options, see object/optionMatcher.h.

Reimplemented from anatomist::AObject.

Definition at line 365 of file surface_d.h.

References anatomist::ObjectActions::colorMaterial(), anatomist::ObjectActions::colorRendering(), anatomist::ObjectActions::fileReload(), anatomist::ObjectActions::generateTexture1D(), anatomist::ObjectActions::generateTexture2D(), BaseTree::insert(), anatomist::AObject::optionTree(), anatomist::ObjectActions::referentialLoad(), anatomist::ObjectActions::renameObject(), anatomist::ObjectActions::saveStatic(), and anatomist::ObjectActions::setAutomaticReferential().

◆ reload()

template<int D>

bool anatomist::ASurface< D >::reload ( const std::string & filename )

virtual

Re-reads objects from disk.

Only called if loadable() is true and fileName() is not empty. A new filename can be passed to the reload function, so that files uncompressed by the ObjectReader in temporary locations can be processed. Overload this function in inherited classes to implement it.

If onlyoutdated is true, reloading will only be done if the files containing the object have been modified since the object has been created/loaded/saved

Reimplemented from anatomist::AObject.

Definition at line 458 of file surface_d.h.

References aims::Reader< class >::read().

◆ render()

template<int D>

bool anatomist::ASurface< D >::render	(	anatomist::PrimList &	,
		const anatomist::ViewState &
	)

virtual

rendering (generally 2D or 3D using OpenGL).

Calls GLComponent API ig glAPI() is not null, otherwise nothing is done and this method should be overloaded.

Reimplemented from anatomist::AObject.

Definition at line 104 of file surface_d.h.

◆ savable()

template<int D>

virtual bool anatomist::ASurface< D >::savable ( ) const

inlinevirtual

Reimplemented from anatomist::AObject.

Reimplemented in anatomist::TextObject.

Definition at line 109 of file surface.h.

◆ save()

template<int D>

bool anatomist::ASurface< D >::save ( const std::string & filename )

virtual

Reimplemented from anatomist::AObject.

Definition at line 437 of file surface_d.h.

◆ setInternalsChanged()

template<int D>

void anatomist::ASurface< D >::setInternalsChanged ( )

virtual

Notifies some underlying lower-level objects have changed.

Useful especially after an underlying AIMS object has been modified

Reimplemented from anatomist::AObject.

Definition at line 590 of file surface_d.h.

◆ setSurface() [1/2]

template<int D>

void anatomist::ASurface< D >::setSurface ( carto::rc_ptr< TimeSurfaceType > surf )

Definition at line 234 of file surface_d.h.

References anatomist::Material::NormalIsDirection, anatomist::Material::set(), and anatomist::Material::UseShader.

Referenced by anatomist::ASurface< D >::clone().

◆ setSurface() [2/2]

template<int D>

void anatomist::ASurface< D >::setSurface ( TimeSurfaceType * surf )

Using this method, the ASurface takes ownership of the surface (by making a new rc_ptr on it)

Definition at line 265 of file surface_d.h.

References anatomist::Material::NormalIsDirection, anatomist::Material::set(), and anatomist::Material::UseShader.

◆ surface() [1/2]

template<int D>

carto::rc_ptr<TimeSurfaceType> anatomist::ASurface< D >::surface ( )

inline

Definition at line 78 of file surface.h.

References anatomist::ASurface< D >::_surface.

◆ surface() [2/2]

template<int D>

const carto::rc_ptr<TimeSurfaceType> anatomist::ASurface< D >::surface ( ) const

inline

Definition at line 76 of file surface.h.

References anatomist::ASurface< D >::_surface.

◆ surfaceOfTime() [1/2]

template<int D>

ASurface< D >::SurfaceType * anatomist::ASurface< D >::surfaceOfTime ( float time )

Definition at line 166 of file surface_d.h.

◆ surfaceOfTime() [2/2]

template<int D>

const ASurface< D >::SurfaceType * anatomist::ASurface< D >::surfaceOfTime ( float time ) const

Definition at line 148 of file surface_d.h.

◆ UpdateMinAndMax()

template<int D>

void anatomist::ASurface< D >::UpdateMinAndMax

virtual

Definition at line 188 of file surface_d.h.

References norm().

Member Data Documentation

◆ _planar

template<int D>

bool anatomist::ASurface< D >::_planar

protected

Definition at line 128 of file surface.h.

Referenced by anatomist::ASurface< D >::isPlanar().

◆ _surface

template<int D>

carto::rc_ptr<TimeSurfaceType> anatomist::ASurface< D >::_surface

protected

Definition at line 127 of file surface.h.

Referenced by anatomist::ASurface< D >::surface().

The documentation for this class was generated from the following files:

anatomist/surface/surface.h
anatomist/surface/surface_d.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

template<int D> class anatomist::ASurface< D >

Member Typedef Documentation

◆ SurfaceType

◆ TimeSurfaceType

◆ Triangle

Constructor & Destructor Documentation

◆ ASurface()

◆ ~ASurface()

Member Function Documentation

◆ actualTime()

◆ attributed() [1/2]

◆ attributed() [2/2]

◆ boundingBox()

◆ clone()

◆ freeSurface()

◆ glMakeBodyGLL()

◆ glNormalArray()

◆ glNumNormal()

◆ glNumPolygon()

◆ glNumVertex()

◆ glPolygonArray()

◆ glPolygonSize()

◆ glVertexArray()

◆ invertPolygons()

◆ invertPolygonsStatic()

◆ Is2DObject()

◆ Is3DObject()

◆ isPlanar()

◆ loadable()

◆ MaxT()

◆ MinT()

◆ notifyObservers()

◆ objectAt()

◆ optionTree()

◆ reload()

◆ render()

◆ savable()

◆ save()

◆ setInternalsChanged()

◆ setSurface() [1/2]

◆ setSurface() [2/2]

◆ surface() [1/2]

◆ surface() [2/2]

◆ surfaceOfTime() [1/2]

◆ surfaceOfTime() [2/2]

◆ UpdateMinAndMax()

Member Data Documentation

◆ _planar

◆ _surface

template<int D>
class anatomist::ASurface< D >